PXD010074 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteogenomic characterization of microbial communities fueled by metal-sulfide oxidation of inactive hydrothermal chimneys |
Description | Iron-sulfur minerals such as pyrite are found in many marine benthic habitats. At deep-sea hydrothermal vent sites they occur as massive sulfide chimneys. Hydrothermal chimneys formed by mineral precipitation from reduced vent fluids upon mixing with cold oxygenated sea water. While microorganisms inhabiting actively venting chimneys and utilizing reduced compounds dissolved in the fluids for energy generation are well studied, only little is known about the microorganisms inhabiting inactive sulfide chimneys. We performed a comprehensive meta-proteogenomic analysis combined with radiometric dating to investigate the diversity and function of microbial communities found on inactive sulfide chimneys of different ages from the Manus Basin (SW Pacific). Our study sheds light on potential lifestyles and ecological niches of yet poorly described bacterial clades dominating inactive chimney communities. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:45:35.469.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD010074 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Stephanie Markert |
SpeciesList | scientific name: Archaea; NCBI TaxID: 2157; scientific name: Eukaryota (eucaryotes); NCBI TaxID: 2759; scientific name: Viruses; NCBI TaxID: 10239; scientific name: Bacteria; NCBI TaxID: 2; |
ModificationList | Oxidation |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-06-08 06:55:08 | ID requested | |
1 | 2019-01-02 05:34:31 | announced | |
⏵ 2 | 2024-10-22 04:45:43 | announced | 2024-10-22: Updated project metadata. |
Publication List
Meier DV, Pjevac P, Bach W, Markert S, Schweder T, Jamieson J, Petersen S, Amann R, Meyerdierks A, Microbial metal-sulfide oxidation in inactive hydrothermal vent chimneys suggested by metagenomic and metaproteomic analyses. Environ Microbiol, 21(2):682-701(2019) [pubmed] |
10.1111/1462-2920.14514; |
10.6019/PXD010074; |
Keyword List
curator keyword: Biological |
submitter keyword: chimneys, LC-MSMS,Hydrothermal vents, metaproteome |
Contact List
Stephanie Markert |
contact affiliation | Universität Greifswald Institut für Pharmazie, AG Pharmazeutische Biotechnologie Greifswald, Germany |
contact email | stephanie.markert@uni-greifswald.de |
lab head | |
Stephanie Markert |
contact affiliation | University of Greifswald |
contact email | stephanie.markert@uni-greifswald.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD010074
- Label: PRIDE project
- Name: Proteogenomic characterization of microbial communities fueled by metal-sulfide oxidation of inactive hydrothermal chimneys