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PXD010074

PXD010074 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleProteogenomic characterization of microbial communities fueled by metal-sulfide oxidation of inactive hydrothermal chimneys
DescriptionIron-sulfur minerals such as pyrite are found in many marine benthic habitats. At deep-sea hydrothermal vent sites they occur as massive sulfide chimneys. Hydrothermal chimneys formed by mineral precipitation from reduced vent fluids upon mixing with cold oxygenated sea water. While microorganisms inhabiting actively venting chimneys and utilizing reduced compounds dissolved in the fluids for energy generation are well studied, only little is known about the microorganisms inhabiting inactive sulfide chimneys. We performed a comprehensive meta-proteogenomic analysis combined with radiometric dating to investigate the diversity and function of microbial communities found on inactive sulfide chimneys of different ages from the Manus Basin (SW Pacific). Our study sheds light on potential lifestyles and ecological niches of yet poorly described bacterial clades dominating inactive chimney communities.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_04:45:35.469.xml
DigitalObjectIdentifierhttps://dx.doi.org/10.6019/PXD010074
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterStephanie Markert
SpeciesList scientific name: Archaea; NCBI TaxID: 2157; scientific name: Eukaryota (eucaryotes); NCBI TaxID: 2759; scientific name: Viruses; NCBI TaxID: 10239; scientific name: Bacteria; NCBI TaxID: 2;
ModificationListOxidation
InstrumentLTQ Orbitrap Velos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02018-06-08 06:55:08ID requested
12019-01-02 05:34:31announced
22024-10-22 04:45:43announced2024-10-22: Updated project metadata.
Publication List
Meier DV, Pjevac P, Bach W, Markert S, Schweder T, Jamieson J, Petersen S, Amann R, Meyerdierks A, Microbial metal-sulfide oxidation in inactive hydrothermal vent chimneys suggested by metagenomic and metaproteomic analyses. Environ Microbiol, 21(2):682-701(2019) [pubmed]
10.1111/1462-2920.14514;
10.6019/PXD010074;
Keyword List
curator keyword: Biological
submitter keyword: chimneys, LC-MSMS,Hydrothermal vents, metaproteome
Contact List
Stephanie Markert
contact affiliationUniversität Greifswald Institut für Pharmazie, AG Pharmazeutische Biotechnologie Greifswald, Germany
contact emailstephanie.markert@uni-greifswald.de
lab head
Stephanie Markert
contact affiliationUniversity of Greifswald
contact emailstephanie.markert@uni-greifswald.de
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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