PXD010004

PXD010004 is an original dataset announced via ProteomeXchange.

Title	CASP XL-MS target H0968 (ID32): Cross-linking for the 13th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction (CASP13)
Description	Chemical cross-linking coupled to mass spectrometry was used to provide distance restraints for different homo- and heterooligomeric complexes as part of the CASP13 experiment (https://www.predictioncenter.org/casp13/index.cgi).
HostingRepository	PRIDE
AnnounceDate	2019-10-07
AnnouncementXML	Submission_2019-10-07_00:34:33.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Alexander Leitner
SpeciesList	scientific name: Klebsiella pneumoniae 342; NCBI TaxID: 507522;
ModificationList	iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2018-06-01 03:00:13	ID requested
⏵ 1	2019-10-07 00:34:35	announced

Fajardo JE, Shrestha R, Gil N, Belsom A, Crivelli SN, Czaplewski C, Fidelis K, Grudinin S, Karasikov M, Karczy, ń, ska AS, Kryshtafovych A, Leitner A, Liwo A, Lubecka EA, Monastyrskyy B, Pag, è, s G, Rappsilber J, Sieradzan AK, Sikorska C, Trabjerg E, Fiser A, Assessment of chemical-crosslink-assisted protein structure modeling in CASP13. Proteins, 87(12):1283-1297(2019) [pubmed]

curator keyword: Technical

submitter keyword: Chemical cross-linking

DSS

PDH

DMTMM

structural proteomics

CASP

Alexander Leitner
contact affiliation	Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland
contact email	leitner@imsb.biol.ethz.ch
lab head
Alexander Leitner
contact affiliation	ETH Zurich, Institute of Molecular Systems Biology
contact email	leitner@imsb.biol.ethz.ch
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD010004

PRIDE project URI

• PRIDE
  1. PXD010004
     1. Label: PRIDE project
     2. Name: CASP XL-MS target H0968 (ID32): Cross-linking for the 13th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction (CASP13)