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DataSet Summary

  • HostingRepository: PRIDE
  • AnnounceDate: 2018-12-04
  • AnnouncementXML: Submission_2018-12-04_01:41:19.xml
  • DigitalObjectIdentifier: http://dx.doi.org/10.6019/PXD009966
  • ReviewLevel: Peer-reviewed dataset
  • DatasetOrigin: Original data
  • RepositorySupport: Supported dataset by repository
  • PrimarySubmitter: Anders Lindroth
  • Title: Transcriptome and protein interaction profiling in cancer cells with mutations in histone H3.3
  • Description: This entry contains proteome data extracted from co-immunoprecipitation of engineered H3F3A locus fused to GFP in HEK293 cell line, followed by PAGE separation, in-gel proteolytic digestion and LC-MS/MS identification.
  • SpeciesList: scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
  • ModificationList: residues isobaric at 113.084064 Da; Oxidation; Carbamidomethyl
  • Instrument: Q Exactive

Dataset History

VersionDatetimeStatusChangeLog Entry
02018-05-30 15:04:53ID requested
12018-11-07 06:00:58announced
22018-12-04 01:41:20announcedUpdated project metadata.

Publication List

  1. Lim J, Park JH, Baude A, Yoo Y, Lee YK, Schmidt CR, Park JB, Fellenberg J, Zustin J, Haller F, Krücken I, Kang HG, Park YJ, Plass C, Lindroth AM, The histone variant H3.3 G34W substitution in giant cell tumor of the bone link chromatin and RNA processing. Sci Rep, 7(1):13459(2017) [pubmed]

Keyword List

  1. curator keyword: Technical, Biological
  2. submitter keyword: Human, Giant Cell Tumor of the Bone, LC-MS/MS, H3.3

Contact List

    Anders Mikael Lindroth
    • contact affiliation: National Cancer Center Dept. of Cancer Biomedical Science, GCSP Rep. of Korea
    • contact email: lindroth@ncc.re.kr
    • lab head:
    Anders Lindroth
    • contact affiliation: National Cancer Center
    • contact email: lindroth@ncc.re.kr
    • dataset submitter:

Full Dataset Link List

  1. Dataset FTP location
  2. PRIDE project URI
Repository Record List

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