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PXD009886

PXD009886 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleChapman_CCM_2018
DescriptionThis submission contains the mass spectrometry files for the manuscript by Chapman and colleagues that characterize KRI-1 in C. elegans by affinity purification experiments of KRI-1 fused to GFP. Controls used for this experiment include ACT-5 fused to GFP and N2 worms. This dataset consists of 18 raw MS files and associated with peak lists (mzML) and mass spectrometry results (mzid) in standard formats, acquired on a Thermo Orbitrap Elite Hybrid Ion Trap-Orbitrap operated in DDA mode. Samples were generated by Eric Chapman and affinity purification, mass spectrometric acquisition and analysis was performed by Christopher Go. Raw files are deposited here in MassIVE. Brent Derry is the corresponding author of the manuscript (brent.derry@sickkids.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca).
HostingRepositoryMassIVE
AnnounceDate2019-06-02
AnnouncementXMLSubmission_2019-06-02_07:15:01.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterGingras Lab
SpeciesList scientific name: Caenorhabditis elegans; NCBI TaxID: 6239;
ModificationListdeamidated L-asparagine; deamidated L-glutamine; L-methionine sulfoxide
InstrumentLTQ Orbitrap Elite
Dataset History
RevisionDatetimeStatusChangeLog Entry
02018-05-24 11:17:58ID requested
12019-06-02 07:30:07announced
Publication List
Chapman EM, Lant B, Ohashi Y, Yu B, Schertzberg M, Go C, Dogra D, Koskim, รค, ki J, Girard R, Li Y, Fraser AG, Awad IA, Abdelilah-Seyfried S, Gingras AC, Derry WB, A conserved CCM complex promotes apoptosis non-autonomously by regulating zinc homeostasis. Nat Commun, 10(1):1791(2019) [pubmed]
Keyword List
submitter keyword: Affinity purification, Protein-protein interaction, AP-MS, KRI1_CCM1, Apoptosis, Zinc Homeostasis, Irradiation
Contact List
Anne-Claude Gingras
contact affiliationLTRI
contact emailgingras@lunenfeld.ca
lab head
Gingras Lab
contact affiliationSamuel Lunenfeld Research Institute
contact emailgingras@mshri.on.ca
dataset submitter
Full Dataset Link List
MassIVE dataset URI
Dataset FTP location
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