PXD009886
PXD009886 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Chapman_CCM_2018 |
Description | This submission contains the mass spectrometry files for the manuscript by Chapman and colleagues that characterize KRI-1 in C. elegans by affinity purification experiments of KRI-1 fused to GFP. Controls used for this experiment include ACT-5 fused to GFP and N2 worms. This dataset consists of 18 raw MS files and associated with peak lists (mzML) and mass spectrometry results (mzid) in standard formats, acquired on a Thermo Orbitrap Elite Hybrid Ion Trap-Orbitrap operated in DDA mode. Samples were generated by Eric Chapman and affinity purification, mass spectrometric acquisition and analysis was performed by Christopher Go. Raw files are deposited here in MassIVE. Brent Derry is the corresponding author of the manuscript (brent.derry@sickkids.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca). |
HostingRepository | MassIVE |
AnnounceDate | 2019-06-02 |
AnnouncementXML | Submission_2019-06-02_07:15:01.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Gingras Lab |
SpeciesList | scientific name: Caenorhabditis elegans; NCBI TaxID: 6239; |
ModificationList | deamidated L-asparagine; deamidated L-glutamine; L-methionine sulfoxide |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2018-05-24 11:17:58 | ID requested | |
⏵ 1 | 2019-06-02 07:30:07 | announced |
Publication List
Chapman EM, Lant B, Ohashi Y, Yu B, Schertzberg M, Go C, Dogra D, Koskim, รค, ki J, Girard R, Li Y, Fraser AG, Awad IA, Abdelilah-Seyfried S, Gingras AC, Derry WB, A conserved CCM complex promotes apoptosis non-autonomously by regulating zinc homeostasis. Nat Commun, 10(1):1791(2019) [pubmed] |
Keyword List
submitter keyword: Affinity purification, Protein-protein interaction, AP-MS, KRI1_CCM1, Apoptosis, Zinc Homeostasis, Irradiation |
Contact List
Anne-Claude Gingras | |
---|---|
contact affiliation | LTRI |
contact email | gingras@lunenfeld.ca |
lab head | |
Gingras Lab | |
contact affiliation | Samuel Lunenfeld Research Institute |
contact email | gingras@mshri.on.ca |
dataset submitter |
Full Dataset Link List
MassIVE dataset URI |
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000082400 |