PXD009813

PXD009813 is an original dataset announced via ProteomeXchange.

Title	Human salivary basic proline-rich proteins
Description	Human basic proline-rich proteins and basic glycosylated proline-rich proteins are the most complex family of human adult salivary proteins, secreted only by the parotid gland, expressed by the polymorphic PRB1-4 genes. This study reports the results obtained for their characterization in our laboratory utilizing integrated top-down and bottom-up HPLC-ESI-MS and MS/MS platform. The family include 11 parent peptides/proteins and more than 6 parent glycosylated proteins. Despite the complexity, on the basis of their primary structure they result the product of the duplication of three repeats and we propose that they can be classified in two main groups, the first including the peptides called P-E, P-Ko, IB-6, Ps-1, Ps-2, P-H, P-F, P-J, and P-D, the second including the peptides called IB-1, II-2 and the glycosylated basic proline-rich proteins codified by PRB3 and PRB4 genes. A third minor hybrid group includes the proteins called IB-8a Con1- and Con1+. Some of the proteins of the family (IB-1, II-2 and P-J) are almost always detectable in adult human saliva, while the others are expressed with different frequencies according to the phenotype. Various isoforms are detectable in the adult saliva and three of them, until now not reported (P-H S1→A, P-Ko P36→S, P-Ko A41→S), were characterized by MS/MS fragmentation.
HostingRepository	PRIDE
AnnounceDate	2018-08-08
AnnouncementXML	Submission_2018-08-08_09:47:41.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Barbara Manconi
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	phosphorylated residue
Instrument	LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2018-05-17 08:10:10	ID requested
⏵ 1	2018-08-08 09:47:43	announced

Padiglia A, Orr, ù R, Boroumand M, Olianas A, Manconi B, Sanna MT, Desiderio C, Iavarone F, Liori B, Messana I, Castagnola M, Cabras T, Extensive Characterization of the Human Salivary Basic Proline-Rich Protein Family by Top-Down Mass Spectrometry. J Proteome Res, 17(9):3292-3307(2018) [pubmed]

curator keyword: Biological

submitter keyword: Human, Saliva, High-Resolution ESI−MS/MS Experiments,

Tiziana Cabras
contact affiliation	Cagliari University
contact email	tcabras@unica.it
lab head
Barbara Manconi
contact affiliation	University of Cagliari
contact email	bmanconi@unica.it
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD009813
     1. Label: PRIDE project
     2. Name: Human salivary basic proline-rich proteins