PXD009771

PXD009771 is an original dataset announced via ProteomeXchange.

Title	A Comparative Liver Label-Free Liquid Chromatography-Mass Spectrometry Proteomic Profile Highlights Putative Metabolic Differences Between two Pig Breeds
Description	Pig breeds have different attitude to traits like growth rate, carcass composition and reproduction parameters as well as other traits. These traits considered as external traits or end phenotypes are the outcome of complex biological processes and interactions. The main goal of pig breeding programs and the basis for crossbreeding is finding a balance between these traits. In pig production, Large White and Duroc breeds are commonly used to optimise respectively fertility and growth ability and differ on several production traits, indeed the first breed as a high fertility characters whereas Duroc is used as terminal sire for her growth performance and good carcass quality traits. In this study, we have used a quantitative label-free LC-MS proteomics approach to characterise and compare the liver proteome of two heavy Italian pig breeds, Italian Duroc and Italian Large White to identify difference due to their different genetic background. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 703094.
HostingRepository	PRIDE
AnnounceDate	2018-09-13
AnnouncementXML	Submission_2018-09-19_03:55:36.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD009771
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Alessio Di Luca
SpeciesList	scientific name: Sus scrofa domesticus (domestic pig); NCBI TaxID: 9825;
ModificationList	Deamidated; Oxidation; Carbamidomethyl
Instrument	6520 Quadrupole Time-of-Flight LC/MS

Revision	Datetime	Status	ChangeLog Entry
0	2018-05-14 03:36:36	ID requested
1	2018-09-13 02:31:35	announced
⏵ 2	2018-09-19 03:55:38	announced	Updated publication reference for PubMed record(s): 30208024.

Bovo S, Di Luca A, Galimberti G, Dall'Olio S, Fontanesi L, A comparative analysis of label-free liquid chromatography-mass spectrometry liver proteomic profiles highlights metabolic differences between pig breeds. PLoS One, 13(9):e0199649(2018) [pubmed]

curator keyword: Biological

submitter keyword: Proteomics, Label-free LC-MS, Duroc, Large White, Liver

Luca Fontanesi
contact affiliation	Department of Agricultural and Food Sciences Viale Fanin 46, 40127, Bologna, Univerity of Bologna Italy
contact email	luca.fontanesi@unibo.it
lab head
Alessio Di Luca
contact affiliation	University of Bologna
contact email	alessio.diluca2@unibo.it
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/09/PXD009771

PRIDE project URI

• PRIDE
  1. PXD009771
     1. Label: PRIDE project
     2. Name: A Comparative Liver Label-Free Liquid Chromatography-Mass Spectrometry Proteomic Profile Highlights Putative Metabolic Differences Between two Pig Breeds