⮝ Full datasets listing

PXD009697

PXD009697 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleImproving silkworm genome annotation using a proteogenomics approach
DescriptionWe collected a total of 9.8 million mass spectra generated in the laboratory from the proteomics analyses of different silkworm tissues, including the posterior silk gland (PSG) 30, middle silk gland 31, ovary and testis 32, head 33, brain, prothoracic glands, subesophageal ganglion 34, hemolymph 35, fat body 36 and embryo 37,38 of domestic silkworm, and the posterior silk gland of wild silkworm 39.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_04:55:31.991.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterBoxiong Zhong
SpeciesList scientific name: Bombyx mori (Silk moth); NCBI TaxID: 7091;
ModificationListacetylated residue
InstrumentLTQ Orbitrap
Dataset History
RevisionDatetimeStatusChangeLog Entry
02018-05-07 05:10:47ID requested
12019-07-01 00:59:25announced
22024-10-22 04:55:32announced2024-10-22: Updated project metadata.
Publication List
10.1021/acs.jproteome.8b00965;
Ye X, Tang X, Wang X, Che J, Wu M, Liang J, Ye L, Qian Q, Li J, You Z, Zhang Y, Wang S, Zhong B, Improving Silkworm Genome Annotation Using a Proteogenomics Approach. J Proteome Res, 18(8):3009-3019(2019) [pubmed]
Keyword List
submitter keyword: gene function, silkworm, alternative splicing, transcriptomics,proteogenomics
Contact List
Boxiong Zhong
contact affiliationCollege of Animal Sciences, Zhejiang University, Hangzhou, P. R. China
contact emailbxzhong@zju.edu.cn
lab head
Boxiong Zhong
contact affiliationZhejiang university,china
contact emailbxzhong@zju.edu.cn
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD009697
PRIDE project URI
Repository Record List
[ + ]