PXD009672

PXD009672 is an original dataset announced via ProteomeXchange.

Title	Improving silkworm genome annotation using a proteogenomics approach
Description	We collected a total of 9.8 million mass spectra data generated in the laboratory from the proteomics analyses of different silkworm tissues, including the posterior silk gland 29, middle silk gland 30, ovary and testis 31, head 32, brain, prothoracic glands, subesophageal ganglion 33, hemolymph 34, fat body 35 and embryo 36,37 of domestic silkworm, and the posterior silk gland of wild silkworm 38.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:53:25.728.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Boxiong Zhong
SpeciesList	scientific name: Bombyx mori (Silk moth); NCBI TaxID: 7091;
ModificationList	acetylated residue
Instrument	LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2018-05-04 02:16:56	ID requested
1	2019-07-01 00:50:39	announced
⏵ 2	2024-10-22 04:53:27	announced	2024-10-22: Updated project metadata.

10.1021/acs.jproteome.8b00965;

Ye X, Tang X, Wang X, Che J, Wu M, Liang J, Ye L, Qian Q, Li J, You Z, Zhang Y, Wang S, Zhong B, Improving Silkworm Genome Annotation Using a Proteogenomics Approach. J Proteome Res, 18(8):3009-3019(2019) [pubmed]

submitter keyword: gene function, silkworm, alternative splicing, transcriptomics,proteogenomics

Bo-xiong Zhong
contact affiliation	College of Animal Sciences, Zhejiang University, Hangzhou, P. R. China
contact email	bxzhong@zju.edu.cn
lab head
Boxiong Zhong
contact affiliation	Zhejiang university,china
contact email	bxzhong@zju.edu.cn
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD009672

PRIDE project URI

• PRIDE
  1. PXD009672
     1. Label: PRIDE project
     2. Name: Improving silkworm genome annotation using a proteogenomics approach