PXD009626

PXD009626 is an original dataset announced via ProteomeXchange.

Title	Synechocystis sp. proteome on differnt light conditions
Description	Cyanobacteria are an integral part of the Earth’s biogeochemical cycles and a promising resource for the synthesis of renewable bioproducts from atmospheric CO2. Sustainable industrial applications, however, are still scarce and the true limits of phototrophic production remain unknown. One of the limitations of further progress is our insufficient understanding of the quantitative changes in photoautotrophic metabolism that occur during growth in dynamic environments. Uncovering principles of allocation of the key metabolites or proteins as a response to changing environment can provide significant advances in our understanding of phototrophic production limits. However, resolving such complex question requires multidisciplinary approach combining highly-controlled cyanobacteria cultivation coupled to quantitative analyses of specific cellular components. The following datase represents proteomic analysis of the model cyanobacterium Synechocystis sp. PCC 6803 that was cultivated in the well controlled environment of laboratory-scale photobioreactors in the quasi-continuous regime that allowed for maintaining the cells in the exponential growth phase. The sampels were taken under light-limited (25 - 220 µmol(photons) m-2 s-1), optimal (440 µmol(photons) m-2 s-1) and photoinhibited growth (1100 µmol(photons) m-2 s-1). Each culture was sampled in five biological replicates.
HostingRepository	PRIDE
AnnounceDate	2019-01-07
AnnouncementXML	Submission_2019-02-11_04:28:24.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Gereon Poschmann
SpeciesList	scientific name: Synechocystis sp.; NCBI TaxID: 1143;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2018-04-30 01:38:52	ID requested
1	2019-01-07 06:58:09	announced
⏵ 2	2019-02-11 04:28:26	announced	Updated publication reference for PubMed record(s): 30714903.

Zav, ř, el T, Faizi M, Loureiro C, Poschmann G, St, ü, hler K, Sinetova M, Zorina A, Steuer R, Č, erven, ý J, Quantitative insights into the cyanobacterial cell economy. Elife, 8():(2019) [pubmed]

curator keyword: Biological

submitter keyword: Synechocystis sp. PCC 6803, photorophic production, LC-MS/MS, label-free quantification, cyanobacteria, photobioreactor

Gereon Poschmann
contact affiliation	Molecular Proteomics Laboratory (MPL) Biologisch-Medizinisches Forschungszentrum (BMFZ) Heinrich-Heine-Universität Düsseldorf Universitätsstraße 1 40225 Düsseldorf
contact email	gereon.poschmann@hhu.de
lab head
Gereon Poschmann
contact affiliation	Heinrich Heine Universität Düsseldorf
contact email	gereon.poschmann@rub.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD009626

PRIDE project URI

• PRIDE
  1. PXD009626
     1. Label: PRIDE project
     2. Name: Synechocystis sp. proteome on differnt light conditions