⮝ Full datasets listing

PXD009551

PXD009551 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleGlobal Interactome of ZIKV (FSS13025) viral proteins.
DescriptionTo identify the global cellular interactome of each ZIKV proteins, individual HA-tagged ZIKV proteins (FSS13025 Asian strain) were expressed in the neuroblastoma cell line SK-N-BE2 using lentivirus-mediated delivery. Cellular lysates were subjected to Affinity purification (AP) using HA-agarose beads, and eluates digested with Trypsin and LysC before analysis via LC-MS/MS using an Orbitrap instrument.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_04:44:36.424.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterPietro Scaturro
SpeciesList scientific name: Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013; NCBI TaxID: 2043570; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListacetylated residue; iodoacetamide derivatized residue
InstrumentLTQ Orbitrap Velos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02018-04-20 01:33:37ID requested
12018-09-03 01:19:50announced
22018-09-05 04:41:05announcedUpdated publication reference for PubMed record(s): 30177828.
32024-10-22 04:44:44announced2024-10-22: Updated project metadata.
Publication List
10.1038/s41586-018-0484-5;
Scaturro P, Stukalov A, Haas DA, Cortese M, Draganova K, P, ł, aszczyca A, Bartenschlager R, G, ö, tz M, Pichlmair A, An orthogonal proteomic survey uncovers novel Zika virus host factors. Nature, 561(7722):253-257(2018) [pubmed]
Keyword List
curator keyword: Biological, Biomedical
submitter keyword: ZIKV, Asian strain FSS13025, Interactome, Zika virus
Contact List
Andreas Pichlmair
contact affiliationImmunopathology of Virus Infections Institute of Virology Technical University of Munich Munich, Germany
contact emailandreas.pichlmair@tum.de
lab head
Pietro Scaturro
contact affiliationSystems Arbovirology, Leibniz Institute of Virology
contact emailpietro.scaturro@tum.de
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/09/PXD009551
PRIDE project URI
Repository Record List
[ + ]