PXD009517

PXD009517 is an original dataset announced via ProteomeXchange.

Title	The host cell proteome of Physcomitrella patens
Description	Host cell proteins are inevitable contaminants of biopharmaceuticals. Here, we performed detailed analyses of the host cell proteome of moss (Physcomitrella patens) bioreactor supernatants using mass spectrometry and subsequent bioinformatics analysis. Distinguishing between the apparent secretome and intracellular contaminants, a complex extracellular proteolytic network including subtilisin-like proteases, metallo-proteases and aspartic proteases was identified. Further, we confirmed predicted cleavage sites of 40 endogenous signal peptides employing an N-terminomics approach.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:44:17.691.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD009517
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Ralf Reski
SpeciesList	scientific name: Physcomitrella patens subsp. patens (Moss); NCBI TaxID: 3218;
ModificationList	Ammonia-loss; Phospho; Dehydrated; Oxidation; Acetyl; Carbamidomethyl; Gln->pyro-Glu
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2018-04-16 04:53:25	ID requested
1	2018-09-19 03:52:33	announced
⏵ 2	2024-10-22 04:44:26	announced	2024-10-22: Updated project metadata.

10.1021/acs.jproteome.8b00423;

10.6019/PXD009517;

Hoernstein SNW, Fode B, Wiedemann G, Lang D, Niederkr, ü, ger H, Berg B, Schaaf A, Frischmuth T, Schlosser A, Decker EL, Reski R, Host Cell Proteome of Physcomitrella patens Harbors Proteases and Protease Inhibitors under Bioproduction Conditions. J Proteome Res, 17(11):3749-3760(2018) [pubmed]

curator keyword: Technical, Biological

submitter keyword: Bioreactor,Physcomitrella patens, host cell proteome

Ralf Reski
contact affiliation	Plant Biotechnology, Faculty of Biology, University of Freiburg, Schaenzlestr.1, D-79104 Freiburg, Germany
contact email	ralf.reski@biologie.uni-freiburg.de
lab head
Ralf Reski
contact affiliation	Faculty of Biology, University of Freiburg (Chair Plant Biotechnology), Schaenzlestr. 1, D-79104 Freiburg
contact email	ralf.reski@biologie.uni-freiburg.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/09/PXD009517

PRIDE project URI

• PRIDE
  1. PXD009517
     1. Label: PRIDE project
     2. Name: The host cell proteome of Physcomitrella patens