PXD009480 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Spatial connectomics to identify agents relevant to lignocellulose deconstruction in fungi |
Description | Characterization of secretome of two white rot and two brown rot fungal species grown on aspen. Goal is to utilize temporal sampling to assist in elucidating lignocellulose degradation mechanism |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:44:30.940.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD009480 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Matthew Monroe |
SpeciesList | scientific name: Serpula lacrymans; NCBI TaxID: 85982; scientific name: Postia placenta; NCBI TaxID: 104341; scientific name: Gloeophyllum trabeum (Brown rot fungus); NCBI TaxID: 104355; scientific name: Trametes versicolor; NCBI TaxID: 5325; |
ModificationList | Oxidation; Carbamidomethyl |
Instrument | LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-04-12 03:09:58 | ID requested | |
1 | 2018-07-16 04:09:22 | announced | |
2 | 2018-08-08 09:34:00 | announced | Updated publication reference for PubMed record(s): 29884760. |
⏵ 3 | 2024-10-22 04:44:39 | announced | 2024-10-22: Updated project metadata. |
Publication List
10.1128/aem.00159-18; |
Presley GN, Panisko E, Purvine SO, Schilling JS, Coupling Secretomics with Enzyme Activities To Compare the Temporal Processes of Wood Metabolism among White and Brown Rot Fungi. Appl Environ Microbiol, 84(16):(2018) [pubmed] |
10.6019/PXD009480; |
Keyword List
curator keyword: Biological |
submitter keyword: lignocellulose,proteomics, fungi |
Contact List
Jonathan Schilling |
contact affiliation | University of Minnesota |
contact email | schillin@umn.edu |
lab head | |
Matthew Monroe |
contact affiliation | Pacific Northwest National Laboratory |
contact email | matthew.monroe@pnnl.gov |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/07/PXD009480 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD009480
- Label: PRIDE project
- Name: Spatial connectomics to identify agents relevant to lignocellulose deconstruction in fungi