PXD009449

PXD009449 is an original dataset announced via ProteomeXchange.

Title	Systematic characterization of 21 post-translational modification using synthetic peptides
Description	The data presented in this study in the - context of the ProteoemTools project - is based on the synthesis of about 5000 synthetic peptides carrying 21 different post-translational modifications to systematically characterize their chromatographic and mass spectrometric properties using multimodal LC-MS/MS.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:44:20.696.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Daniel Zolg
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monomethylated residue; 3'-nitro-L-tyrosine; N6-malonyl-L-lysine; biotinylated residue; phosphorylated residue; acetylated residue; dimethylated residue; iodoacetamide derivatized residue; L-citrulline; succinylated residue; ubiquitination signature dipeptidyl lysine; N6-crotonyl-L-lysine; formylated residue; monohydroxylated proline; N6,N6,N6-trimethyl-L-lysine
Instrument	Orbitrap Fusion Lumos

Revision	Datetime	Status	ChangeLog Entry
0	2018-04-10 01:49:58	ID requested
1	2018-06-04 06:16:21	announced
⏵ 2	2024-10-22 04:44:28	announced	2024-10-22: Updated project metadata.

10.1074/mcp.tir118.000783;

Zolg DP, Wilhelm M, Schmidt T, M, é, dard G, Zerweck J, Knaute T, Wenschuh H, Reimer U, Schnatbaum K, Kuster B, ProteomeTools: Systematic Characterization of 21 Post-translational Protein Modifications by Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS) Using Synthetic Peptides. Mol Cell Proteomics, 17(9):1850-1863(2018) [pubmed]

ProteomeXchange project tag: deep learning, retention time, benchmarking, ProteomeTools, proteometools, machine learning, immunopeptidomics

curator keyword: Technical

submitter keyword: post-translational modification, acetylation, immonium ion, PTM,ProteomeTools, synthetic standard, phosphorylation, diagnostic ion, neutral loss, synthetic peptides

Bernhard Kuster
contact affiliation	Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany
contact email	kuster@tum.de
lab head
Daniel Zolg
contact affiliation	Technical University of Munich
contact email	daniel.zolg@tum.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009449

PRIDE project URI

• PRIDE
  1. PXD009449
     1. Label: PRIDE project
     2. Name: Systematic characterization of 21 post-translational modification using synthetic peptides