PXD009279 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomic analysis of E. coli K-12 LE392, P. putida KT2440 under exposure of carbamazepine |
Description | The goals of this study are to use SWATH-MS to detect bacterial proteomic profiles of wild-type E. coli K-12 LE392, P. putida KT2440, and their quantitative protein response under the exposure of antiepileptic drug carbamazepine. Three concentrations of carbamazepine were applied, which were 0.05 mg/L, 10.0 mg/L and 50.0 mg/L. The group without dosing carbamazepine was the control group. Each concentration was conducted in triplicate. By comparing the proteomic profiles of experimental groups and control group, the effects of carbamazepine on bacterial translational levels can be revealed. |
HostingRepository | PRIDE |
AnnounceDate | 2018-10-11 |
AnnouncementXML | Submission_2018-10-11_00:30:18.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Jianhua Guo |
SpeciesList | scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Pseudomonas putida KT2440; NCBI TaxID: 160488; |
ModificationList | No PTMs are included in the dataset |
Instrument | TripleTOF 5600 |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-03-21 05:09:06 | ID requested | |
1 | 2018-10-10 08:03:33 | announced | |
⏵ 2 | 2018-10-11 00:30:19 | announced | Updated project metadata. |
Publication List
Wang Y, Lu J, Mao L, Li J, Yuan Z, Bond PL, Guo J, Antiepileptic drug carbamazepine promotes horizontal transfer of plasmid-borne multi-antibiotic resistance genes within and across bacterial genera. ISME J, 13(2):509-522(2019) [pubmed] |
Keyword List
curator keyword: Biomedical |
submitter keyword: E. coli, P. putida, carbamazepine, SWATH-MS |
Contact List
Jianhua Guo |
contact affiliation | Advanced Water Management Centre, The University of Queensland, St. Lucia, Brisbane, Queensland, Australia, 4072 |
contact email | j.guo@awmc.uq.edu.au |
lab head | |
Jianhua Guo |
contact affiliation | University of Queensland |
contact email | j.guo@awmc.uq.edu.au |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD009279 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD009279
- Label: PRIDE project
- Name: Proteomic analysis of E. coli K-12 LE392, P. putida KT2440 under exposure of carbamazepine