PXD009244

PXD009244 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Quantitative Label Free Ultra Definition Mass-Spectrometry Provides Novel Data on the Proteomic Signature of Oral Squamous Cell Carcinoma
Description	There are no early detection biomarkers or prognostic markers for oral squamous cell carcinoma (OSCC) thus many are detected late, with unpredictable disease course. Using systems level analysis on shotgun proteomics with quantitative label-free ultra-definition mass spectrometry, our study aims to find novel proteins involved in both low and high grade OSCC tissue, and to further understand pathways involved in cancer development and progression, using proteomic analysis.
HostingRepository	PRIDE
AnnounceDate	2022-03-02
AnnouncementXML	Submission_2022-03-01_23:37:06.445.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Sakari Joenväärä
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Synapt MS

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-03-16 09:35:46	ID requested
⏵ 1	2022-03-01 23:37:08	announced

Publication List

Dickinson A, Saraswat M, M, ä, kitie A, Sil, é, n R, Hagstr, ö, m J, Haglund C, Joenv, ä, ä, r, ä S, Sil, é, n S, Label-free tissue proteomics can classify oral squamous cell carcinoma from healthy tissue in a stage-specific manner. Oral Oncol, 86():206-215(2018) [pubmed]

Dickinson A, Saraswat M, M, ä, kitie A, Sil, é, n R, Hagstr, ö, m J, Haglund C, Joenv, ä, ä, r, ä S, Sil, é, n S, Label-free tissue proteomics can classify oral squamous cell carcinoma from healthy tissue in a stage-specific manner. Oral Oncol, 86():206-215(2018) [pubmed]

Keyword List

curator keyword: Biological, Biomedical
submitter keyword: OSCC, Tissue proteomics, Label-free proteomics, Tongue cancer

curator keyword: Biological, Biomedical

submitter keyword: OSCC, Tissue proteomics, Label-free proteomics, Tongue cancer

Contact List

Suvi Renkonen
contact affiliation	Department of Otorhinolaryngology – Head and Neck Surgery, University of Helsinki and Helsinki University Hospital, Helsinki 00130, Finland and Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm 11382, Sweden
contact email	suvi.renkonen@helsinki.fi
lab head
Sakari Joenväärä
contact affiliation	Helsinki University
contact email	sakari.joenvaara@helsinki.fi
dataset submitter

Full Dataset Link List

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PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/03/PXD009244

PRIDE project URI

Repository Record List

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