PXD009222

PXD009222 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	HEK-AXL glycopeptides supporting GlycopeptideGraphMS development
Description	To support the development of a novel bioinformatic solution for glycopeptide identification, the cancer-associated AXL glycoprotein was used to validate the approach. AXL has 6 N-glycan sites.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:43:48.519.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Matthew Choo
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; complex glycosylation; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion ETD

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-03-15 07:42:42	ID requested
1	2019-05-23 03:25:10	announced
⏵ 2	2024-10-22 04:43:56	announced	2024-10-22: Updated project metadata.

Publication List

Choo MS, Wan C, Rudd PM, Nguyen-Khuong T, GlycopeptideGraphMS: Improved Glycopeptide Detection and Identification by Exploiting Graph Theoretical Patterns in Mass and Retention Time. Anal Chem, 91(11):7236-7244(2019) [pubmed]
10.1021/acs.analchem.9b00594;

Choo MS, Wan C, Rudd PM, Nguyen-Khuong T, GlycopeptideGraphMS: Improved Glycopeptide Detection and Identification by Exploiting Graph Theoretical Patterns in Mass and Retention Time. Anal Chem, 91(11):7236-7244(2019) [pubmed]

10.1021/acs.analchem.9b00594;

Keyword List

ProteomeXchange project tag: Reference
curator keyword: Technical
submitter keyword: Human, cancer, glycoprotein, AXL, bioinformatics

ProteomeXchange project tag: Reference

curator keyword: Technical

submitter keyword: Human, cancer, glycoprotein, AXL, bioinformatics

Contact List

Terry Nguyen-Khuong
contact affiliation	Head of Analytics Group, Bioprocessing Technology Institute, Agency for Science Technology and Reseach
contact email	terry_nguyen_khuong@bti.a-star.edu.sg
lab head
Matthew Choo
contact affiliation	Bioprocessing Technology Institute Analytics Group
contact email	choo.matt@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD009222
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD009222

PRIDE project URI

Repository Record List

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