PXD009123

PXD009123 is an original dataset announced via ProteomeXchange.

Title	The secretome and N-glycosylation profiles of the charophycean green alga, Penium margaritaceum, resemble those of embryophytes
Description	The secretome is defined as the population of proteins that are secreted into the extracellular environment. Many proteins that are secreted by eukaryotes are N-glycosylated; however, there are striking differences in the diversity and conservation of N-glycosylation patterns between taxa. For example, the secretome and N-glycosylation structures differ between land plants and chlorophyte green algae, but it is not clear when this divergence took place during plant evolution. A potentially valuable system to study this issue is provided by the charophycean green algae (CGA), the immediate ancestors of land plants. In this study, we used lectin affinity chromatography (LAC) coupled with mass spectrometry to characterize the secretome, including secreted N-glycoproteins, of Penium margaritaceum, a member of the CGA. The identified secreted proteins and N-glycans were compared to those known from the chlorophyte green alga Chlamydomonas reinhardtii and the model land plant, Arabidopsis thaliana, to establish their evolutionary context. Our approach allowed the identification of cell wall proteins and proteins modified with N-glycans that are identical to those of embryophytes, suggesting that the P. margaritaceum secretome is more closely related to those of land plants than to those of chlorophytes. The results of this study support the hypothesis that many of the proteins associated with plant cell wall modification, as well as other extracellular processes, evolved prior to the colonization of terrestrial habitats.
HostingRepository	PRIDE
AnnounceDate	2018-03-26
AnnouncementXML	Submission_2018-03-26_00:31:11.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Eliel Ruiz-May
SpeciesList	scientific name: Penium margaritaceum; NCBI TaxID: 102169;
ModificationList	complex glycosylation
Instrument	Q TRAP

Revision	Datetime	Status	ChangeLog Entry
0	2018-03-06 08:49:32	ID requested
⏵ 1	2018-03-26 00:31:12	announced

Ruiz-May E, S, ø, rensen I, Fei Z, Zhang S, Domozych DS, Rose JKC, The Secretome and N-Glycosylation Profiles of the Charophycean Green Alga, Penium margaritaceum, Resemble Those of Embryophytes. Proteomes, 6(2):(2018) [pubmed]

curator keyword: Biological

submitter keyword: secretome

cell wall proteins

embryophytes

charophycean green algae

N-glycosylation

Jocelyn K. C. Rose
contact affiliation	Plant Biology Section, School of Integrative Plant Science, Cornell University
contact email	jr286@cornell.edu
lab head
Eliel Ruiz-May
contact affiliation	Instituto de Ecología, A.C.
contact email	eliel.ruiz@inecol.mx
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD009123
     1. Label: PRIDE project
     2. Name: The secretome and N-glycosylation profiles of the charophycean green alga, Penium margaritaceum, resemble those of embryophytes