PXD009048

PXD009048 is an original dataset announced via ProteomeXchange.

Title	Bloodstream infection N-glycoproteomics
Description	Here we have performed targeted quantitative N-glycoproteomics from plasma samples of patients with confirmed positive blood culture together with age and sex matched febrile controls with negative blood culture reports. Three hundred and sixty eight potential N-glycopeptides were quantified by mass spectrometry and 149 were further selected for identification. Twenty four N-glycopeptides were identified with high confidence together with elucidation of the peptide sequence, N-glycosylation site, glycan composition and proposed glycan structures. these N-glycopeptides can be used as potential biomarkers of bloodstream infection.
HostingRepository	PRIDE
AnnounceDate	2018-04-09
AnnouncementXML	Submission_2018-04-09_01:06:55.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Sakari Joenväärä
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	iodoacetamide derivatized residue
Instrument	Synapt MS

Revision	Datetime	Status	ChangeLog Entry
0	2018-02-27 02:09:58	ID requested
⏵ 1	2018-04-09 01:06:56	announced

Joenvaara S, Saraswat M, Kuusela P, Saraswat S, Agarwal R, Kaartinen J, J, ä, rvinen A, Renkonen R, Quantitative N-glycoproteomics reveals altered glycosylation levels of various plasma proteins in bloodstream infected patients. PLoS One, 13(3):e0195006(2018) [pubmed]

curator keyword: Biomedical

submitter keyword: Bloodstream infection, Sepsis, N-Glycoproteomics, Human plasma

Risto Renkonen
contact affiliation	Transplantation laboratory, Haartmaninkatu 3, PO Box 21, FI-00014 University of Helsinki, Finland. And HUSLAB, Helsinki University Hospital, Finland.
contact email	risto.renkonen@helsinki.fi
lab head
Sakari Joenväärä
contact affiliation	Helsinki University
contact email	sakari.joenvaara@helsinki.fi
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/04/PXD009048

PRIDE project URI

• PRIDE
  1. PXD009048
     1. Label: PRIDE project
     2. Name: Bloodstream infection N-glycoproteomics