PXD009030

PXD009030 is an original dataset announced via ProteomeXchange.

Title	Proteome-based new insights into dimethyl sulfide metabolism of Hyphomicrobium denitrificans
Description	To get further insights in the dimethyl sulfide metabolism of Hyphomicrobium denitrificans, a LC-MS proteomic approach was used. The total protein of three biological replicates of H. denitrificans grown on dimethyl sulfide was compared with three biological replicates grown on dimethylamine. This approach resulted in the identification of several new proteins with a potential involvement in dimethyl sulfide degradation.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:43:34.362.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Marc Sylvester
SpeciesList	scientific name: Hyphomicrobium denitrificans ATCC 51888; NCBI TaxID: 582899;
ModificationList	TMT6plex-126 reporter+balance reagent acylated residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2018-02-23 09:03:48	ID requested
1	2018-06-14 08:24:42	announced
2	2018-06-26 06:49:36	announced	Updated publication reference for PubMed record(s): 29930335.
⏵ 3	2024-10-22 04:43:36	announced	2024-10-22: Updated project metadata.

Koch T, Dahl C, A novel bacterial sulfur oxidation pathway provides a new link between the cycles of organic and inorganic sulfur compounds. ISME J, 12(10):2479-2491(2018) [pubmed]

10.1038/s41396-018-0209-7;

curator keyword: Biological

submitter keyword: LC-MSMS,Hyphomicrobium denitrificans, dissimilatory sulfur metabolism, dimethyl sulfide

Christiane Dahl
contact affiliation	Institute of Microbiology and Biotechnology, University of Bonn
contact email	ChDahl@uni-bonn.de
lab head
Marc Sylvester
contact affiliation	Institute of Biochemistry and Molecular Biology, Medical Faculty, University of Bonn
contact email	msylvest@uni-bonn.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009030

PRIDE project URI

• PRIDE
  1. PXD009030
     1. Label: PRIDE project
     2. Name: Proteome-based new insights into dimethyl sulfide metabolism of Hyphomicrobium denitrificans