PXD009007

PXD009007 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	HIV/HCV co-infection proteomics
Description	Hepatic complications of HCV infection, including fibrosis and cirrhosis are accelerated in HIV-infected individuals. Although liver biopsy remains the gold standard for staging HCV-associated liver disease, this test can result in serious complications and is subject to sampling error. These challenges have prompted a search for non-invasive methods for liver fibrosis staging. To this end, we compared serum proteome profiles at different stages of fibrosis in HIV/HCV co- and HCV mono-infected patients using SELDI-TOF MS.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:42:57.354.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Momar Ndao
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	4800 Proteomics Analyzer

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-02-21 09:17:53	ID requested
1	2018-04-09 01:33:14	announced
⏵ 2	2024-10-22 04:43:02	announced	2024-10-22: Updated project metadata.

Publication List

Golizeh M, Melendez-Pena CE, Ward BJ, Saeed S, Santamaria C, Conway B, Cooper C, Klein MB, Ndao M, Proteomic fingerprinting in HIV/HCV co-infection reveals serum biomarkers for the diagnosis of fibrosis staging. PLoS One, 13(4):e0195148(2018) [pubmed]
10.1371/journal.pone.0195148;

Golizeh M, Melendez-Pena CE, Ward BJ, Saeed S, Santamaria C, Conway B, Cooper C, Klein MB, Ndao M, Proteomic fingerprinting in HIV/HCV co-infection reveals serum biomarkers for the diagnosis of fibrosis staging. PLoS One, 13(4):e0195148(2018) [pubmed]

10.1371/journal.pone.0195148;

Keyword List

curator keyword: Biological
submitter keyword: SELDI, proteomics, HCV, co-infection, liver, fibrosis, HIV, MALDI, biomarker discovery,human

curator keyword: Biological

submitter keyword: SELDI, proteomics, HCV, co-infection, liver, fibrosis, HIV, MALDI, biomarker discovery,human

Contact List

Momar Ndao
contact affiliation	Department of Medicine, McGill University, Montreal, Quebec, Canada
contact email	momar.ndao@mcgill.ca
lab head
Momar Ndao
contact affiliation	McGill University
contact email	momar.ndao@mcgill.ca
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/04/PXD009007
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/04/PXD009007

PRIDE project URI

Repository Record List

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