PXD008894 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomic characterisation of lysosomal and mitochondrial perturbations in human iPSC-derived neurons with PARK2 mutation |
Description | Mitochondrial dysfunction plays a major role in the pathogenesis of sporadic Parkinson’s disease (PD) and familial PD caused by mutations in the PARK2 gene. The protein, parkin, is vital for mitochondrial function, but the lack of key PD phenotypes in PARK2 knockout (KO) rodent models has hindered investigations into parkin’s role in PD pathogenesis. Human isogenic induced pluripotent stem cell (iPSC) lines with and without PARK2 KO enable studies of the effect of parkin dysfunction in dopaminergic neuronal cultures. |
HostingRepository | PRIDE |
AnnounceDate | 2019-07-26 |
AnnouncementXML | Submission_2019-08-02_03:55:49.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Pia Jensen |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | phosphorylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-02-08 01:32:57 | ID requested | |
1 | 2019-07-26 09:17:53 | announced | |
⏵ 2 | 2019-08-02 03:55:51 | announced | Updated publication reference for PubMed record(s): 31333417. |
Publication List
Bogetofte H, Jensen P, Ryding M, Schmidt SI, Okarmus J, Ritter L, Worm CS, Hohnholt MC, Azevedo C, Roybon L, Bak LK, Waagepetersen H, Ryan BJ, Wade-Martins R, Larsen MR, Meyer M, Mutation Causes Metabolic Disturbances and Impaired Survival of Human iPSC-Derived Neurons. Front Cell Neurosci, 13():297(2019) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: Human, iPSC, PARK2, LC-MSMS, TMT, mitochondria |
Contact List
Martin Røssel Larsen |
contact affiliation | Department of Biochemistry and Molecular Biology, Protein Research group, University of Southern Denmark, Odense, Denmark |
contact email | mrl@bmb.sdu.dk |
lab head | |
Pia Jensen |
contact affiliation | University of Southern Denmark |
contact email | pjensen@bmb.sdu.dk |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD008894 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD008894
- Label: PRIDE project
- Name: Proteomic characterisation of lysosomal and mitochondrial perturbations in human iPSC-derived neurons with PARK2 mutation