PXD008888

PXD008888 is an original dataset announced via ProteomeXchange.

Title	Chromatin proteomics experiments for ProteomeHD
Description	These is a collection of chromatin proteomics experiments that make up the 80 "in-house" biological conditions covered by ProteomeHD (see publication for more details). All experiments use SILAC, resulting in 80 SILAC ratios comparing the impact of various drugs (estradiol, TSA, hydroxytamoxifen, etc.), growth factors (TNFalpha) or other treatments (ionizing radiation) on chromatin composition. For a more detailed description see the Supplementary Table S2 of the publication, which can also be downloaded from here.
HostingRepository	PRIDE
AnnounceDate	2019-11-11
AnnouncementXML	Submission_2019-11-12_03:33:07.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Georg Kustatscher
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos; Q Exactive; LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2018-02-07 05:47:41	ID requested
1	2019-04-09 08:18:12	announced
⏵ 2	2019-11-12 03:33:09	announced	2019-11-12: Updated publication reference for PubMed record(s): 31690884.

Kustatscher G, Grabowski P, Schrader TA, Passmore JB, Schrader M, Rappsilber J, Co-regulation map of the human proteome enables identification of protein functions. Nat Biotechnol, 37(11):1361-1371(2019) [pubmed]

curator keyword: Technical, Biological, Biomedical

submitter keyword: Chromatin proteomics, SILAC, ProteomeHD, ChEP, NCC

Juri Rappsilber
contact affiliation	Wellcome Centre for Cell Biology, Edinburgh
contact email	juri.rappsilber@ed.ac.uk
lab head
Georg Kustatscher
contact affiliation	Wellcome Centre for Cell Biology
contact email	georg.kustatscher@ed.ac.uk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD008888

PRIDE project URI

• PRIDE
  1. PXD008888
     1. Label: PRIDE project
     2. Name: Chromatin proteomics experiments for ProteomeHD