PXD008860

PXD008860 is an original dataset announced via ProteomeXchange.

Title	Deep proteogenomics of Bacillus subtilis provides insights into function and evolution of bacterial organism
Description	"Bacillus subtilis is an aerobic, endospore forming, rod-shaped Gram-positive bacterium. It has a relatively small genome of 4,215,606 bp with 4,197 protein coding genes. It is considered a model organism to study natural phenomena, such as chromosome replication, sporulation or swarming motility. Furthermore, many bacterial pathogens are closely related to B. subtilis, making it a highly significant system for research on potential targets for drug therapeutics. Although B. subtilis is among the best characterised bacterial systems, many of its gene products are still non-annotated, completely uncharacterised and/or their post-translational landscape is unknown. In the current study we aim at broadening the available information on Bacillus subtilis by providing a comprehensive resource for the microbial community encompassing a wide array of information at the genome, proteome, phosphoproteome and acetylome level."
HostingRepository	PRIDE
AnnounceDate	2018-11-28
AnnouncementXML	Submission_2018-11-28_02:44:10.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Nicolas Nalpas
SpeciesList	scientific name: Bacillus subtilis subsp. subtilis str. 168; NCBI TaxID: 224308;
ModificationList	phosphorylated residue; acetylated residue
Instrument	LTQ Orbitrap XL; LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2018-02-05 07:54:37	ID requested
⏵ 1	2018-11-28 02:44:12	announced

Ravikumar V, Nalpas NC, Anselm V, Krug K, Lenuzzi M, Š, estak MS, Domazet-Lo, š, o T, Mijakovic I, Macek B, In-depth analysis of Bacillus subtilis proteome identifies new ORFs and traces the evolutionary history of modified proteins. Sci Rep, 8(1):17246(2018) [pubmed]

curator keyword: Biological

submitter keyword: "Bacillus subtilis, Shotgun proteomics, Phosphorylation, Acetylation, Proteogenomics, Phylostratigraphy"

Prof. Dr. Boris Macek
contact affiliation	Proteome Center Tuebingen Interfaculty Institute for Cell Biology Auf der Morgenstelle 15 72076 Tuebingen Germany
contact email	boris.macek@uni-tuebingen.de
lab head
Nicolas Nalpas
contact affiliation	Tuebingen University
contact email	nalpas.nicolas@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/11/PXD008860

PRIDE project URI

• PRIDE
  1. PXD008860
     1. Label: PRIDE project
     2. Name: Deep proteogenomics of Bacillus subtilis provides insights into function and evolution of bacterial organism