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PXD008841

PXD008841 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleBreast cancer proteome landscape
DescriptionProteome characterization of 45 breast tumors using HiRIEF nanoLC-MS/MS.
HostingRepositoryjPOST
AnnounceDate2019-02-04
AnnouncementXMLSubmission_2021-02-04_17:06:42.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterHenrik Johansson
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListS-carboxamidomethyl-L-cysteine; L-methionine sulfoxide; TMT6plex reporter+balance reagent N-acylated residue; TMT6plex reporter+balance reagent acylated N-terminal
InstrumentQ Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02018-02-02 02:12:10ID requested
12019-02-03 07:00:10announced
22020-08-11 04:15:05announced2020-08-11: Updated PubMed.
32021-02-04 17:06:43announced2021-02-04: Updated FTP location.
Publication List
Johansson HJ, Socciarelli F, Vacanti NM, Haugen MH, Zhu Y, Siavelis I, Fernandez-Woodbridge A, Aure MR, Sennblad B, Vesterlund M, Branca RM, Orre LM, Huss M, Fredlund E, Beraki E, Garred Ø, Boekel J, Sauer T, Zhao W, Nord S, Höglander EK, Jans DC, Brismar H, Haukaas TH, Bathen TF, Schlichting E, Naume B, Luders T, Borgen E, Kristensen VN, Russnes HG, Lingjærde OC, Mills GB, Sahlberg KK, Børresen-Dale AL, Lehtiö J, Geisler J, Hofvind S, Engebråten O, Geitvik GA, Langerød A, Kåresen R, Mælandsmo GM, Sørlie T, Skjerven HK, Park D, Hartman-Johnsen OJ, Breast cancer quantitative proteome and proteogenomic landscape. Nat Commun, 10(1):1600(2019) [pubmed]
Keyword List
submitter keyword: breast tumors, PAM50, proteome, TMT
Contact List
Janne Lehtiö
lab head
Henrik Johansson
contact affiliationKarolinska Institutet
dataset submitter
Full Dataset Link List
jPOST dataset URI
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.biosciencedbc.jp/archive/jpostrepos/JPST000265