PXD008838

PXD008838 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	The farmed Atlantic salmon (Salmo salar) skin-mucus proteome
Description	Norway is the largest producer and exporter of farmed Atlantic salmon (Salmo salar) worldwide. Skin disorders correlated with bacterial infections represent an important challenge for fish farmers due to the economic losses caused. Little is known about this topic, thus studying the skin-mucus of Salmo salar and its bacterial community depict a step forward in understanding fish welfare in aquaculture. In this study, we used label free quantitative mass spectrometry to investigate the skin-mucus proteins associated with both Atlantic salmon and bacteria. In addition, the microbial temporal proteome dynamics during 9 days of mucus incubation with sterilized seawater was investigated, in order to evaluate their capacity to utilize mucus components for growth in this environment.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_03:59:30.768.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Magnus Arntzen
SpeciesList	scientific name: Salmo salar (Atlantic salmon); NCBI TaxID: 8030;
ModificationList	monohydroxylated residue; acetylated residue
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-02-01 09:57:50	ID requested
1	2019-07-15 03:31:47	announced
⏵ 2	2024-10-22 03:59:34	announced	2024-10-22: Updated project metadata.

Publication List

10.3390/genes10070515;
Minniti G, R, ø, d Sandve S, Padra JT, Heldal Hagen L, Lind, é, n S, Pope PB, Ø, Arntzen M, Vaaje-Kolstad G, ) Skin-Mucus Proteome and Its Nutrient Potential for the Resident Bacterial Community. Genes (Basel), 10(7):(2019) [pubmed]

10.3390/genes10070515;

Minniti G, R, ø, d Sandve S, Padra JT, Heldal Hagen L, Lind, é, n S, Pope PB, Ø, Arntzen M, Vaaje-Kolstad G, ) Skin-Mucus Proteome and Its Nutrient Potential for the Resident Bacterial Community. Genes (Basel), 10(7):(2019) [pubmed]

Keyword List

curator keyword: Biological
submitter keyword: Salmo salar, skin-mucus, mucin, microbiome, teleost, proteases, aquaculture,proteome

curator keyword: Biological

submitter keyword: Salmo salar, skin-mucus, mucin, microbiome, teleost, proteases, aquaculture,proteome

Contact List

Gustav Vaaje-Kolstad
contact affiliation	Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), Ås, Norway
contact email	gustav.vaaje-kolstad@nmbu.no
lab head
Magnus Arntzen
contact affiliation	Norwegian University of Life Sciences
contact email	magnus.arntzen@nmbu.no
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD008838
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD008838

PRIDE project URI

Repository Record List

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