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PXD008838

PXD008838 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleThe farmed Atlantic salmon (Salmo salar) skin-mucus proteome
DescriptionNorway is the largest producer and exporter of farmed Atlantic salmon (Salmo salar) worldwide. Skin disorders correlated with bacterial infections represent an important challenge for fish farmers due to the economic losses caused. Little is known about this topic, thus studying the skin-mucus of Salmo salar and its bacterial community depict a step forward in understanding fish welfare in aquaculture. In this study, we used label free quantitative mass spectrometry to investigate the skin-mucus proteins associated with both Atlantic salmon and bacteria. In addition, the microbial temporal proteome dynamics during 9 days of mucus incubation with sterilized seawater was investigated, in order to evaluate their capacity to utilize mucus components for growth in this environment.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_03:59:30.768.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterMagnus Arntzen
SpeciesList scientific name: Salmo salar (Atlantic salmon); NCBI TaxID: 8030;
ModificationListmonohydroxylated residue; acetylated residue
InstrumentQ Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02018-02-01 09:57:50ID requested
12019-07-15 03:31:47announced
22024-10-22 03:59:34announced2024-10-22: Updated project metadata.
Publication List
10.3390/genes10070515;
Minniti G, R, ø, d Sandve S, Padra JT, Heldal Hagen L, Lind, é, n S, Pope PB, Ø, Arntzen M, Vaaje-Kolstad G, ) Skin-Mucus Proteome and Its Nutrient Potential for the Resident Bacterial Community. Genes (Basel), 10(7):(2019) [pubmed]
Keyword List
curator keyword: Biological
submitter keyword: Salmo salar, skin-mucus, mucin, microbiome, teleost, proteases, aquaculture,proteome
Contact List
Gustav Vaaje-Kolstad
contact affiliationFaculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), Ås, Norway
contact emailgustav.vaaje-kolstad@nmbu.no
lab head
Magnus Arntzen
contact affiliationNorwegian University of Life Sciences
contact emailmagnus.arntzen@nmbu.no
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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