PXD008838 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | The farmed Atlantic salmon (Salmo salar) skin-mucus proteome |
Description | Norway is the largest producer and exporter of farmed Atlantic salmon (Salmo salar) worldwide. Skin disorders correlated with bacterial infections represent an important challenge for fish farmers due to the economic losses caused. Little is known about this topic, thus studying the skin-mucus of Salmo salar and its bacterial community depict a step forward in understanding fish welfare in aquaculture. In this study, we used label free quantitative mass spectrometry to investigate the skin-mucus proteins associated with both Atlantic salmon and bacteria. In addition, the microbial temporal proteome dynamics during 9 days of mucus incubation with sterilized seawater was investigated, in order to evaluate their capacity to utilize mucus components for growth in this environment. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_03:59:30.768.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Magnus Arntzen |
SpeciesList | scientific name: Salmo salar (Atlantic salmon); NCBI TaxID: 8030; |
ModificationList | monohydroxylated residue; acetylated residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-02-01 09:57:50 | ID requested | |
1 | 2019-07-15 03:31:47 | announced | |
⏵ 2 | 2024-10-22 03:59:34 | announced | 2024-10-22: Updated project metadata. |
Publication List
10.3390/genes10070515; |
Minniti G, R, ø, d Sandve S, Padra JT, Heldal Hagen L, Lind, é, n S, Pope PB, Ø, Arntzen M, Vaaje-Kolstad G, ) Skin-Mucus Proteome and Its Nutrient Potential for the Resident Bacterial Community. Genes (Basel), 10(7):(2019) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: Salmo salar, skin-mucus, mucin, microbiome, teleost, proteases, aquaculture,proteome |
Contact List
Gustav Vaaje-Kolstad |
contact affiliation | Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), Ås, Norway |
contact email | gustav.vaaje-kolstad@nmbu.no |
lab head | |
Magnus Arntzen |
contact affiliation | Norwegian University of Life Sciences |
contact email | magnus.arntzen@nmbu.no |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD008838
- Label: PRIDE project
- Name: The farmed Atlantic salmon (Salmo salar) skin-mucus proteome