PXD008775 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | HLA-DM-mediated HLA-DR3 Immunopeptidome |
Description | T2 cells stably expressing HLA-DR3 and variable amounts of HLA-DM (none, low, and high, per GFP co-expression) were lysed and HLA-DR3-peptide complexes were isolated via immunoprecipitation. Antigenic peptides were then eluted and quantified by LC-MS/MS to assess presented antigenic epitopes. |
HostingRepository | PRIDE |
AnnounceDate | 2018-04-16 |
AnnouncementXML | Submission_2018-05-23_01:01:27.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Eliot Morrison |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-01-29 00:45:54 | ID requested | |
1 | 2018-04-16 01:38:22 | announced | |
⏵ 2 | 2018-05-23 01:01:28 | announced | Updated publication reference for PubMed record(s): 29774024. |
Publication List
Á, lvaro-Benito M, Morrison E, Abualrous ET, Kuropka B, Freund C, Quantification of HLA-DM-Dependent Major Histocompatibility Complex of Class II Immunopeptidomes by the Peptide Landscape Antigenic Epitope Alignment Utility. Front Immunol, 9():872(2018) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: HLA-DR, HLA-DM, Immunopeptidome |
Contact List
Christian Freund |
contact affiliation | Protein Biochemistry, Institute for Biochemistry, Freie Universität Berlin, Berlin, Germany |
contact email | chfreund@zedat.fu-berlin.de |
lab head | |
Eliot Morrison |
contact affiliation | FU Berlin |
contact email | eliot.morrison@fu-berlin.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/04/PXD008775 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD008775
- Label: PRIDE project
- Name: HLA-DM-mediated HLA-DR3 Immunopeptidome