PXD008738

PXD008738 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Implementation of data-independent acquisition mass spectrometry in metaproteomics of gut microbiota
Description	A novel approach for metaproteomics that utilizes data independent acquisition (DIA) mass spectrometry which enables accurate and consistent quantification of peptides from samples with a complex microbial composition.
HostingRepository	PRIDE
AnnounceDate	2019-11-25
AnnouncementXML	Submission_2019-11-25_05:08:31.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Sami Pietila
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-01-22 23:42:43	ID requested
⏵ 1	2019-11-25 05:08:33	announced

Publication List

Aakko J, Pietil, ä S, Suomi T, Mahmoudian M, Toivonen R, Kouvonen P, Rokka A, H, ä, nninen A, Elo LL, Data-Independent Acquisition Mass Spectrometry in Metaproteomics of Gut Microbiota-Implementation and Computational Analysis. J Proteome Res, 19(1):432-436(2020) [pubmed]

Aakko J, Pietil, ä S, Suomi T, Mahmoudian M, Toivonen R, Kouvonen P, Rokka A, H, ä, nninen A, Elo LL, Data-Independent Acquisition Mass Spectrometry in Metaproteomics of Gut Microbiota-Implementation and Computational Analysis. J Proteome Res, 19(1):432-436(2020) [pubmed]

Keyword List

curator keyword: Technical, Biological
submitter keyword: DDA,DIA,SWATH-MS,LC

curator keyword: Technical, Biological

submitter keyword: DDA,DIA,SWATH-MS,LC

Contact List

Laura Elo
contact affiliation	Turku Centre for Biotechnology
contact email	laura.elo@utu.fi
lab head
Sami Pietila
contact affiliation	University of Turku
contact email	sampie@utu.fi
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD008738
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD008738

PRIDE project URI

Repository Record List

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