PXD008701 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Aggregating sequences that occur in many proteins constitute weak spots of bacterial proteostasis, part 2 |
Description | Aggregation is a sequence-specific process, nucleated by short aggregation prone regions (APR) that can be exploited to induce aggregation of proteins containing the same APR. Here we find that most APRs are unique within a proteome, but that a small minority of APRs occur in many proteins. When aggregation is nucleated in bacteria by such frequently occurring APRs, it leads to massive and lethal inclusion body formation containing a large number of proteins. Build-up of bacterial resistance against these peptides is slow. In addition, the approach is effective against drug-resistant clinical isolates of E. coli and A. baumannii, reducing bacterial load in a murine bladder infection model. Our results indicate that redundant APRs are weak points of bacterial protein homeostasis and that targeting these may be an attractive antibacterial strategy. |
HostingRepository | PRIDE |
AnnounceDate | 2018-03-05 |
AnnouncementXML | Submission_2018-03-05_01:46:49.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD008701 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Ladan Khodaparast |
SpeciesList | scientific name: Escherichia coli; NCBI TaxID: 562; |
ModificationList | Oxidation; Carbamidomethyl |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-01-17 02:53:11 | ID requested | |
⏵ 1 | 2018-03-05 01:46:51 | announced | |
Publication List
Khodaparast L, Khodaparast L, Gallardo R, Louros NN, Michiels E, Ramakrishnan R, Ramakers M, Claes F, Young L, Shahrooei M, Wilkinson H, Desager M, Mengistu Tadesse W, Nilsson KPR, Hammarstr, ö, m P, Aertsen A, Carpentier S, Van Eldere J, Rousseau F, Schymkowitz J, Aggregating sequences that occur in many proteins constitute weak spots of bacterial proteostasis. Nat Commun, 9(1):866(2018) [pubmed] |
Keyword List
ProteomeXchange project tag: Protein Misfolding and Aggregation (B/D-HPP) |
curator keyword: Biological |
submitter keyword: inclusion bodies, Protein aggregation, E. coli, aggregation prone regions |
Contact List
Joost Schymkowitz |
contact affiliation | Switch Laboratory (VIB-KU Leuven Center for Brain & Disease Research)-Department of Cellular and Molecular Medicine |
contact email | joost.schymkowitz@kuleuven.vib.be |
lab head | |
Ladan Khodaparast |
contact affiliation | VIB‐KU Leuven Center for Brain & Disease Research Department of Cellular and Molecular Medicine |
contact email | Ladan.khodaparast@kuleuven.vib.be |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD008701
- Label: PRIDE project
- Name: Aggregating sequences that occur in many proteins constitute weak spots of bacterial proteostasis, part 2