PXD008675

PXD008675 is an original dataset announced via ProteomeXchange.

Title	Gut Microbial Ecosystem Multiomics in Inflammatory Bowel Disease
Description	Using multiple omics approaches to explore the effect of the gut microbial ecosytem on inflammatory bowel disease
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:06:55.908.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD008675
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Matthew Monroe
SpeciesList	scientific name: environmental samples; NCBI TaxID: 48479;
ModificationList	Oxidation
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2018-01-15 01:51:45	ID requested
1	2019-04-05 03:37:02	announced
2	2019-06-03 01:26:05	announced	Updated publication reference for PubMed record(s): 31142855.
⏵ 3	2024-10-22 04:06:56	announced	2024-10-22: Updated project metadata.

10.1038/s41586-019-1237-9;

10.6019/PXD008675;

Lloyd-Price J, Arze C, Ananthakrishnan AN, Schirmer M, Avila-Pacheco J, Poon TW, Andrews E, Ajami NJ, Bonham KS, Brislawn CJ, Casero D, Courtney H, Gonzalez A, Graeber TG, Hall AB, Lake K, Landers CJ, Mallick H, Plichta DR, Prasad M, Rahnavard G, Sauk J, Shungin D, V, á, zquez-Baeza Y, White RA, Braun J, Denson LA, Jansson JK, Knight R, Kugathasan S, McGovern DPB, Petrosino JF, Stappenbeck TS, Winter HS, Clish CB, Franzosa EA, Vlamakis H, Xavier RJ, Huttenhower C, Bishai J, Bullock K, Deik A, Dennis C, Kaplan JL, Khalili H, McIver LJ, Moran CJ, Nguyen L, Pierce KA, Schwager R, Sirota-Madi A, Stevens BW, Tan W, Ten Hoeve JJ, Weingart G, Wilson RG, Yajnik V, Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases. Nature, 569(7758):655-662(2019) [pubmed]

curator keyword: Biological, Biomedical

submitter keyword: proteomics, microbiome, IBD

Janet Jansson
contact affiliation	Pacific Northwest National Laboratory
contact email	Janet.Jansson@pnnl.gov
lab head
Matthew Monroe
contact affiliation	Pacific Northwest National Laboratory
contact email	matthew.monroe@pnnl.gov
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/04/PXD008675

PRIDE project URI

• PRIDE
  1. PXD008675
     1. Label: PRIDE project
     2. Name: Gut Microbial Ecosystem Multiomics in Inflammatory Bowel Disease