PXD008597

PXD008597 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Genus wide venom proteomics of cobras (Naja)
Description	Genus-wide proteomics analysis of cobra (Naja) venoms. For top-down analysis, venom samples were reduced with TCEP and measured via HPLC-MS/MS (Q-Exactive) . Spectrum-Protein matching was performed with TopPic1.1 against a genus wide translated transcriptome database and NCBI protein entries from the najas. For bottom-up analysis, HPLC separated fraction of venom were dried down, reduced with triethylphosphine and alkylated with 2-iodoethanol. HPLC-MS/MS experiments were performed on normalflow UHPLC-QTOF system (AB Sciex 5600 TripleTOF). Data analysis (PSM) was performed ProteinPilot version 4.0 and the transcriptome derived protein sequence database.
HostingRepository	MassIVE
AnnounceDate	2022-10-24
AnnouncementXML	Submission_2022-10-24_10:12:21.450.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Daniel Petras
SpeciesList	scientific name: Naja; NCBI TaxID: 8638;
ModificationList	unknown modification
Instrument	instrument model; TripleTOF 5600

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-01-04 17:11:14	ID requested
⏵ 1	2022-10-24 10:12:23	announced

Publication List

Kazandjian TD, Petras D, Robinson SD, van Thiel J, Greene HW, Arbuckle K, Barlow A, Carter DA, Wouters RM, Whiteley G, Wagstaff SC, Arias AS, Albulescu LO, Plettenberg Laing A, Hall C, Heap A, Penrhyn-Lowe S, McCabe CV, Ainsworth S, da Silva RR, Dorrestein PC, Richardson MK, Guti, é, rrez JM, Calvete JJ, Harrison RA, Vetter I, Undheim EAB, W, ü, ster W, Casewell NR, Convergent evolution of pain-inducing defensive venom components in spitting cobras. Science, 371(6527):386-390(2021) [pubmed]

Kazandjian TD, Petras D, Robinson SD, van Thiel J, Greene HW, Arbuckle K, Barlow A, Carter DA, Wouters RM, Whiteley G, Wagstaff SC, Arias AS, Albulescu LO, Plettenberg Laing A, Hall C, Heap A, Penrhyn-Lowe S, McCabe CV, Ainsworth S, da Silva RR, Dorrestein PC, Richardson MK, Guti, é, rrez JM, Calvete JJ, Harrison RA, Vetter I, Undheim EAB, W, ü, ster W, Casewell NR, Convergent evolution of pain-inducing defensive venom components in spitting cobras. Science, 371(6527):386-390(2021) [pubmed]

Keyword List

submitter keyword: Top-down Proteomics, Top-down Venomics, Naja, Snake venom, Venom Proteomics, Cobra

submitter keyword: Top-down Proteomics, Top-down Venomics, Naja, Snake venom, Venom Proteomics, Cobra

Contact List

Eivind Undheim
contact affiliation	The University of Queensland
contact email	e.undheim@uq.edu.au
lab head
Daniel Petras
contact affiliation	University of California San Diego
contact email	dpetras@ucsd.edu
lab head
Daniel Petras
contact affiliation	UC San Diego
contact email	xsirdanielx@gmail.com
dataset submitter

Full Dataset Link List

MassIVE dataset URI
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MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000081885/