PXD008573

PXD008573 is an original dataset announced via ProteomeXchange.

Title	Bacillus velezensis strain GH1-13 LC-MS/MS
Description	Bacillus velezensis strain GH1-13 isolated from a rice paddy soil in Korea has been reported to promote plant growth and inhibit some pathogens. It contains a plasmid pBV71, thought to be of benefit to the strain, but there is no information on its effect. In order to elicit the plasmid effect on gene expression, mRNA and protein levels were analyzed at various stages of bacterial growth. Comparative gene expression profiles between the plasmid-containing and plasmid-free cells revealed that strain GH1-13 activated a transient stress response in the exponential phase. It showed early activation of expression of sigma W operon, liaIHGFSR operon, and transcription regulators for transition state, associated with carbon catabolite repression and secondary metabolite biosynthesis of acetoin, bacillaene, and macrolactin.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:22:00.686.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Yong-Hak Kim
SpeciesList	scientific name: Bacillus velezensis; NCBI TaxID: 492670;
ModificationList	iodoacetamide derivatized residue
Instrument	Velos Plus

Revision	Datetime	Status	ChangeLog Entry
0	2018-01-02 05:08:20	ID requested
1	2021-05-17 04:31:33	announced
⏵ 2	2024-10-22 05:22:01	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

ProteomeXchange project tag: Protein Misfolding and Aggregation (B/D-HPP)

curator keyword: Biological

submitter keyword: whole cell proteome, growth stage, plasmid pBV71,Bacillus velezensis

Yong-Hak Kim
contact affiliation	Daegu Catholic University School of Medicine
contact email	ykim@cu.ac.kr
lab head
Yong-Hak Kim
contact affiliation	Catholic University of Daegu School of Medicine
contact email	ykim@cu.ac.kr
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD008573
     1. Label: PRIDE project
     2. Name: Bacillus velezensis strain GH1-13 LC-MS/MS