PXD008347

PXD008347 is an original dataset announced via ProteomeXchange.

Title	Repetitive somatic embryogenesis induced cytological and proteomic changes in propagated embryogenic lines of Pseudotsuga menziesii [Mirb.]
Description	Objectives: to characterize and to better understand changes at the cellular and molecular levels, in embryogenic lines in Douglas-fir obtained after repetitive somatic embryogenesis, that could explain improvement of their embryogenic potential : to primary lines, secondary ones showed an increase of their embryogenic potential; then tertiary lines showed again an improved embryogenic potential compared to second lines. Interestingly, the proteomic analysis further revealed different sets of significant proteins suggesting that each cycle of repetitive somatic embryogenesis is promoting substantial genome-wide rearrangement of the gene expression pattern.
HostingRepository	PRIDE
AnnounceDate	2018-08-15
AnnouncementXML	Submission_2018-08-15_08:04:59.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Claverol Claverol
SpeciesList	scientific name: Pseudotsuga menziesii; NCBI TaxID: 3357;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2017-12-01 08:00:53	ID requested
⏵ 1	2018-08-15 08:05:01	announced

Gautier F, Eli, á, š, ov, á K, Lepl, é JC, Vondr, á, kov, á Z, Lomenech AM, Le Mett, é C, Label P, Costa G, Trontin JF, Teyssier C, Lelu-Walter MA, Repetitive somatic embryogenesis induced cytological and proteomic changes in embryogenic lines of Pseudotsuga menziesii [Mirb.]. BMC Plant Biol, 18(1):164(2018) [pubmed]

curator keyword: Biological

submitter keyword: Douglas-fir, somatic embryogenesis, embryogenesis induction, plant growth regulators

Marc Bonneu
contact affiliation	University of Bordeaux, Center of Functionnal Genomics, Proteome Platform
contact email	marc.bonneu@bordeaux-inp.fr
lab head
Claverol Claverol
contact affiliation	Plateforme Proteome
contact email	stephane.claverol@u-bordeaux.fr
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/08/PXD008347

PRIDE project URI

• PRIDE
  1. PXD008347
     1. Label: PRIDE project
     2. Name: Repetitive somatic embryogenesis induced cytological and proteomic changes in propagated embryogenic lines of Pseudotsuga menziesii [Mirb.]