PXD008326

PXD008326 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Root shotgun proteomics from Fe- and Mn-deficient and Mn-toxic tomato plants
Description	The aim of this work was to study the effects of Fe and Mn deficiencies and Mn toxicity on the protein profile of the root of tomato (Solanum lycopersicum), with the aim of elucidating plant response mechanisms to these nutritional stresses. Tomato was chosen as a model plant because the tomato genome has been published. The high-throughput shotgun analysis has permitted to identify and quantitate a large number of low abundance proteins in the tomato root. Protein identification was carried out using the Mascot search engine and the non-redundant databases NCBInr and ITAG v2.3.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:42:07.415.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Laura Ceballos-Laita
SpeciesList	scientific name: Solanum lycopersicum; NCBI TaxID: 4081;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap XL

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2017-11-29 05:10:29	ID requested
1	2018-08-06 06:55:25	announced
⏵ 2	2024-10-22 04:42:12	announced	2024-10-22: Updated project metadata.

Publication List

10.1016/j.jprot.2018.06.016;
Ceballos-Laita L, Gutierrez-Carbonell E, Imai H, Abad, í, a A, Uemura M, Abad, í, a J, L, ó, pez-Mill, á, n AF, Effects of manganese toxicity on the protein profile of tomato (Solanum lycopersicum) roots as revealed by two complementary proteomic approaches, two-dimensional electrophoresis and shotgun analysis. J Proteomics, 185():51-63(2018) [pubmed]

10.1016/j.jprot.2018.06.016;

Ceballos-Laita L, Gutierrez-Carbonell E, Imai H, Abad, í, a A, Uemura M, Abad, í, a J, L, ó, pez-Mill, á, n AF, Effects of manganese toxicity on the protein profile of tomato (Solanum lycopersicum) roots as revealed by two complementary proteomic approaches, two-dimensional electrophoresis and shotgun analysis. J Proteomics, 185():51-63(2018) [pubmed]

Keyword List

curator keyword: Biological
submitter keyword: Iron deficiency
Mn deficiency
Mn toxicity
Shotgun proteomics
Tomato
Root

curator keyword: Biological

submitter keyword: Iron deficiency

Mn deficiency

Mn toxicity

Shotgun proteomics

Tomato

Root

Contact List

Laura Ceballos-Laita
contact affiliation	Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, Apdo. 13034, 50080 Zaragoza, Spain
contact email	lceballos@eead.csic.es
lab head
Laura Ceballos-Laita
contact affiliation	Experimental Station Aula Dei-CSIC
contact email	lceballos@eead.csic.es
dataset submitter

Full Dataset Link List

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PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/08/PXD008326

PRIDE project URI

Repository Record List

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