PXD008212 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Picky – a simple online method designer for targeted proteomics |
Description | The accuracy of the retention time prediction build into picky was tested on a digested HeLa sample analyzed with a standard data-dependend acquisition method (top20). |
HostingRepository | PRIDE |
AnnounceDate | 2017-12-13 |
AnnouncementXML | Submission_2018-03-02_00:18:02.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Henrik Zauber |
SpeciesList | scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-11-15 00:45:25 | ID requested | |
1 | 2017-12-13 06:01:18 | announced | |
⏵ 2 | 2018-03-02 00:18:03 | announced | Updated publication reference for PubMed record(s): 29489744. |
Publication List
Zauber H, Kirchner M, Selbach M, Picky: a simple online PRM and SRM method designer for targeted proteomics. Nat Methods, 15(3):156-157(2018) [pubmed] |
Keyword List
curator keyword: Technical |
submitter keyword: SRM, PRM, Retention-time |
Contact List
Prof. Dr. Matthias Sebach |
contact affiliation | Max-Delbrück-Centrum für Molekulare Medizin in der Helmholtz-Gemeinschaft (MDC) Robert-Rössle-Str. 10, 13125 Berlin-Buch |
contact email | matthias.selbach@mdc-berlin.de |
lab head | |
Henrik Zauber |
contact affiliation | MDC Berlin-Buch |
contact email | henrik.zauber@mdc-berlin.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/12/PXD008212 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD008212
- Label: PRIDE project
- Name: Picky – a simple online method designer for targeted proteomics