PXD008001

PXD008001 is an original dataset announced via ProteomeXchange.

Title	The Holm oak (Quercus ilex) proteome as defined by shotgun MS (nLC-MS/MS, Orbitrap) approach
Description	Holm oak (Quercus ilex) is the most important and representative specie of the Mediterranean forest and of the Spanish agrosilvo-pastoral ecosystem “Dehesa”. Despite its environmental and economic interest, Holm oak is still an orphan species whose biology is very little known, especially at the molecular level. In this research, we have performed a shotgun proteomic approach (nLC-MSMS, Orbitrap) to analyze the Holm oak proteome, using, as starting material, a pool generated by mixing equal amounts of homogenized tissue, including embryo, cotyledons (from mature acorns), and leaves and roots (from 6-month old plantlets grown in a greenhouse under environmental conditions). The proteome generated will be the bases of further studies on population variability, growth, development and responses to stresses in this species.
HostingRepository	PRIDE
AnnounceDate	2018-01-16
AnnouncementXML	Submission_2018-01-16_06:16:00.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Isabel Maria Gómez
SpeciesList	scientific name: Quercus ilex (Holly oak); NCBI TaxID: 58334;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2017-10-19 01:04:40	ID requested
⏵ 1	2018-01-16 06:16:01	announced

Dataset with its publication pending

curator keyword: Biological

submitter keyword: Quercus ilex, proteome, LC-MSMS

Isabel María Gómez Gálvez
contact affiliation	University of Córdoba (Spain)
contact email	b32gogai@uco.es
lab head
Isabel Maria Gómez
contact affiliation	University of Cordoba
contact email	b32gogai@uco.es
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/01/PXD008001

PRIDE project URI

• PRIDE
  1. PXD008001
     1. Label: PRIDE project
     2. Name: The Holm oak (Quercus ilex) proteome as defined by shotgun MS (nLC-MS/MS, Orbitrap) approach