PXD007984 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Composition of Arabidopsis RNA exosomes having incorporated wild type or mutated myc-tagged RRP41 proteins |
Description | RRP41 is one of the nine subunits constituting the core complex of the eukaryotic RNA exosome. Data presented here allowed a proteomic characterization of the interactome of wild type or mutated myc-tagged RRP41 proteins incorporated into the RNA exosome. Flowers from myc-tagged RRP41 expressing lines were used to affinity purify RNA exosomes, which were analyzed by nanoLC-MS/MS analysis. Non-transgenic Arabidopsis lines of Col-0 accession were used in mock-immunoprecipitation experiments as negative controls. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:15:54.934.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Lauriane Kuhn |
SpeciesList | scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702; |
ModificationList | phosphorylated residue; monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | TripleTOF 5600 |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-10-17 07:46:46 | ID requested | |
1 | 2018-01-02 01:47:35 | announced | |
2 | 2018-01-03 23:41:36 | announced | Updated project metadata. |
3 | 2019-03-06 02:11:06 | announced | Updated project metadata. |
⏵ 4 | 2024-10-22 04:15:55 | announced | 2024-10-22: Updated project metadata. |
Publication List
Sikorska N, Zuber H, Gobert A, Lange H, Gagliardi D, RNA degradation by the plant RNA exosome involves both phosphorolytic and hydrolytic activities. Nat Commun, 8(1):2162(2017) [pubmed] |
10.1038/s41467-017-02066-2; |
Keyword List
curator keyword: Biological |
submitter keyword: Arabidopsis, RNA degradation, RRP41, RNA exosome |
Contact List
Gagliardi Dominique |
contact affiliation | Institut de Biologie Moléculaire des Plantes du CNRS Université de Strasbourg 12 rue du Général Zimmer 67084 Strasbourg Cedex France |
contact email | dominique.gagliardi@ibmp-cnrs.unistra.fr |
lab head | |
Lauriane Kuhn |
contact affiliation | CNRS, IBMC, FRC1589 |
contact email | l.kuhn@ibmc-cnrs.unistra.fr |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD007984
- Label: PRIDE project
- Name: Composition of Arabidopsis RNA exosomes having incorporated wild type or mutated myc-tagged RRP41 proteins