⮝ Full datasets listing

PXD007984

PXD007984 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleComposition of Arabidopsis RNA exosomes having incorporated wild type or mutated myc-tagged RRP41 proteins
DescriptionRRP41 is one of the nine subunits constituting the core complex of the eukaryotic RNA exosome. Data presented here allowed a proteomic characterization of the interactome of wild type or mutated myc-tagged RRP41 proteins incorporated into the RNA exosome. Flowers from myc-tagged RRP41 expressing lines were used to affinity purify RNA exosomes, which were analyzed by nanoLC-MS/MS analysis. Non-transgenic Arabidopsis lines of Col-0 accession were used in mock-immunoprecipitation experiments as negative controls.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_04:15:54.934.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterLauriane Kuhn
SpeciesList scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702;
ModificationListphosphorylated residue; monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
InstrumentTripleTOF 5600
Dataset History
RevisionDatetimeStatusChangeLog Entry
02017-10-17 07:46:46ID requested
12018-01-02 01:47:35announced
22018-01-03 23:41:36announcedUpdated project metadata.
32019-03-06 02:11:06announcedUpdated project metadata.
42024-10-22 04:15:55announced2024-10-22: Updated project metadata.
Publication List
Sikorska N, Zuber H, Gobert A, Lange H, Gagliardi D, RNA degradation by the plant RNA exosome involves both phosphorolytic and hydrolytic activities. Nat Commun, 8(1):2162(2017) [pubmed]
10.1038/s41467-017-02066-2;
Keyword List
curator keyword: Biological
submitter keyword: Arabidopsis, RNA degradation, RRP41, RNA exosome
Contact List
Gagliardi Dominique
contact affiliationInstitut de Biologie Moléculaire des Plantes du CNRS Université de Strasbourg 12 rue du Général Zimmer 67084 Strasbourg Cedex France
contact emaildominique.gagliardi@ibmp-cnrs.unistra.fr
lab head
Lauriane Kuhn
contact affiliationCNRS, IBMC, FRC1589
contact emaill.kuhn@ibmc-cnrs.unistra.fr
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/01/PXD007984
PRIDE project URI
Repository Record List
[ + ]