PXD007984

PXD007984 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Composition of Arabidopsis RNA exosomes having incorporated wild type or mutated myc-tagged RRP41 proteins
Description	RRP41 is one of the nine subunits constituting the core complex of the eukaryotic RNA exosome. Data presented here allowed a proteomic characterization of the interactome of wild type or mutated myc-tagged RRP41 proteins incorporated into the RNA exosome. Flowers from myc-tagged RRP41 expressing lines were used to affinity purify RNA exosomes, which were analyzed by nanoLC-MS/MS analysis. Non-transgenic Arabidopsis lines of Col-0 accession were used in mock-immunoprecipitation experiments as negative controls.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:15:54.934.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Lauriane Kuhn
SpeciesList	scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702;
ModificationList	phosphorylated residue; monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	TripleTOF 5600

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2017-10-17 07:46:46	ID requested
1	2018-01-02 01:47:35	announced
2	2018-01-03 23:41:36	announced	Updated project metadata.
3	2019-03-06 02:11:06	announced	Updated project metadata.
⏵ 4	2024-10-22 04:15:55	announced	2024-10-22: Updated project metadata.

Publication List

Sikorska N, Zuber H, Gobert A, Lange H, Gagliardi D, RNA degradation by the plant RNA exosome involves both phosphorolytic and hydrolytic activities. Nat Commun, 8(1):2162(2017) [pubmed]
10.1038/s41467-017-02066-2;

Sikorska N, Zuber H, Gobert A, Lange H, Gagliardi D, RNA degradation by the plant RNA exosome involves both phosphorolytic and hydrolytic activities. Nat Commun, 8(1):2162(2017) [pubmed]

10.1038/s41467-017-02066-2;

Keyword List

curator keyword: Biological
submitter keyword: Arabidopsis, RNA degradation, RRP41, RNA exosome

curator keyword: Biological

submitter keyword: Arabidopsis, RNA degradation, RRP41, RNA exosome

Contact List

Gagliardi Dominique
contact affiliation	Institut de Biologie Moléculaire des Plantes du CNRS Université de Strasbourg 12 rue du Général Zimmer 67084 Strasbourg Cedex France
contact email	dominique.gagliardi@ibmp-cnrs.unistra.fr
lab head
Lauriane Kuhn
contact affiliation	CNRS, IBMC, FRC1589
contact email	l.kuhn@ibmc-cnrs.unistra.fr
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/01/PXD007984
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/01/PXD007984

PRIDE project URI

Repository Record List

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