PXD007932

PXD007932 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Scallop byssal protein identification
Description	To explore the protein components for scallop byssus, the soluble fractions of scallop byssus was extract. For mass spectrometric analysis, proteins were extracted from byssal adhesive plaques, and the major SDS-PAGE fractions was treated with trypsin and analyzed using an Easy-nLC nanoflow HPLC system connected to an Orbitrap Elite mass spectrometer (Thermo Fisher Scientific, USA). The mass spectrometry raw data were searched against the full set of predicted proteins from the C. farreri genome using Mascot v2.3.0 (Matrix Science, London, UK).
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:14:40.846.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Xiaokang Zhang
SpeciesList	scientific name: Azumapecten farreri; NCBI TaxID: 106299;
ModificationList	phosphorylated residue; monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Elite

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2017-10-10 01:58:52	ID requested
1	2018-10-23 14:36:51	announced
⏵ 2	2024-10-22 04:14:44	announced	2024-10-22: Updated project metadata.

Publication List

10.1038/s41467-017-01927-0;
Li Y, Sun X, Hu X, Xun X, Zhang J, Guo X, Jiao W, Zhang L, Liu W, Wang J, Li J, Sun Y, Miao Y, Zhang X, Cheng T, Xu G, Fu X, Wang Y, Yu X, Huang X, Lu W, Lv J, Mu C, Wang D, Li X, Xia Y, Li Y, Yang Z, Wang F, Zhang L, Xing Q, Dou H, Ning X, Dou J, Li Y, Kong D, Liu Y, Jiang Z, Li R, Wang S, Bao Z, Scallop genome reveals molecular adaptations to semi-sessile life and neurotoxins. Nat Commun, 8(1):1721(2017) [pubmed]

10.1038/s41467-017-01927-0;

Li Y, Sun X, Hu X, Xun X, Zhang J, Guo X, Jiao W, Zhang L, Liu W, Wang J, Li J, Sun Y, Miao Y, Zhang X, Cheng T, Xu G, Fu X, Wang Y, Yu X, Huang X, Lu W, Lv J, Mu C, Wang D, Li X, Xia Y, Li Y, Yang Z, Wang F, Zhang L, Xing Q, Dou H, Ning X, Dou J, Li Y, Kong D, Liu Y, Jiang Z, Li R, Wang S, Bao Z, Scallop genome reveals molecular adaptations to semi-sessile life and neurotoxins. Nat Commun, 8(1):1721(2017) [pubmed]

Keyword List

curator keyword: Biological
submitter keyword: LC-MSMS,Scallop byssus, adhesion, protein identification

curator keyword: Biological

submitter keyword: LC-MSMS,Scallop byssus, adhesion, protein identification

Contact List

Liu Weizhi
contact affiliation	Ocean University of China
contact email	liuweizhi@ouc.edu.cn
lab head
Xiaokang Zhang
contact affiliation	Ocean University of China
contact email	xiaokangzhang@126.com
dataset submitter

Full Dataset Link List

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PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD007932

PRIDE project URI

Repository Record List

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