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PXD007932

PXD007932 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleScallop byssal protein identification
DescriptionTo explore the protein components for scallop byssus, the soluble fractions of scallop byssus was extract. For mass spectrometric analysis, proteins were extracted from byssal adhesive plaques, and the major SDS-PAGE fractions was treated with trypsin and analyzed using an Easy-nLC nanoflow HPLC system connected to an Orbitrap Elite mass spectrometer (Thermo Fisher Scientific, USA). The mass spectrometry raw data were searched against the full set of predicted proteins from the C. farreri genome using Mascot v2.3.0 (Matrix Science, London, UK).
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_04:14:40.846.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterXiaokang Zhang
SpeciesList scientific name: Azumapecten farreri; NCBI TaxID: 106299;
ModificationListphosphorylated residue; monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
InstrumentLTQ Orbitrap Elite
Dataset History
RevisionDatetimeStatusChangeLog Entry
02017-10-10 01:58:52ID requested
12018-10-23 14:36:51announced
22024-10-22 04:14:44announced2024-10-22: Updated project metadata.
Publication List
10.1038/s41467-017-01927-0;
Li Y, Sun X, Hu X, Xun X, Zhang J, Guo X, Jiao W, Zhang L, Liu W, Wang J, Li J, Sun Y, Miao Y, Zhang X, Cheng T, Xu G, Fu X, Wang Y, Yu X, Huang X, Lu W, Lv J, Mu C, Wang D, Li X, Xia Y, Li Y, Yang Z, Wang F, Zhang L, Xing Q, Dou H, Ning X, Dou J, Li Y, Kong D, Liu Y, Jiang Z, Li R, Wang S, Bao Z, Scallop genome reveals molecular adaptations to semi-sessile life and neurotoxins. Nat Commun, 8(1):1721(2017) [pubmed]
Keyword List
curator keyword: Biological
submitter keyword: LC-MSMS,Scallop byssus, adhesion, protein identification
Contact List
Liu Weizhi
contact affiliationOcean University of China
contact emailliuweizhi@ouc.edu.cn
lab head
Xiaokang Zhang
contact affiliationOcean University of China
contact emailxiaokangzhang@126.com
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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