PXD007932
PXD007932 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Scallop byssal protein identification |
Description | To explore the protein components for scallop byssus, the soluble fractions of scallop byssus was extract. For mass spectrometric analysis, proteins were extracted from byssal adhesive plaques, and the major SDS-PAGE fractions was treated with trypsin and analyzed using an Easy-nLC nanoflow HPLC system connected to an Orbitrap Elite mass spectrometer (Thermo Fisher Scientific, USA). The mass spectrometry raw data were searched against the full set of predicted proteins from the C. farreri genome using Mascot v2.3.0 (Matrix Science, London, UK). |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:14:40.846.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Xiaokang Zhang |
SpeciesList | scientific name: Azumapecten farreri; NCBI TaxID: 106299; |
ModificationList | phosphorylated residue; monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2017-10-10 01:58:52 | ID requested | |
1 | 2018-10-23 14:36:51 | announced | |
⏵ 2 | 2024-10-22 04:14:44 | announced | 2024-10-22: Updated project metadata. |
Publication List
10.1038/s41467-017-01927-0; |
Li Y, Sun X, Hu X, Xun X, Zhang J, Guo X, Jiao W, Zhang L, Liu W, Wang J, Li J, Sun Y, Miao Y, Zhang X, Cheng T, Xu G, Fu X, Wang Y, Yu X, Huang X, Lu W, Lv J, Mu C, Wang D, Li X, Xia Y, Li Y, Yang Z, Wang F, Zhang L, Xing Q, Dou H, Ning X, Dou J, Li Y, Kong D, Liu Y, Jiang Z, Li R, Wang S, Bao Z, Scallop genome reveals molecular adaptations to semi-sessile life and neurotoxins. Nat Commun, 8(1):1721(2017) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: LC-MSMS,Scallop byssus, adhesion, protein identification |
Contact List
Liu Weizhi | |
---|---|
contact affiliation | Ocean University of China |
contact email | liuweizhi@ouc.edu.cn |
lab head | |
Xiaokang Zhang | |
contact affiliation | Ocean University of China |
contact email | xiaokangzhang@126.com |
dataset submitter |
Full Dataset Link List
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD007932 |
PRIDE project URI |
Repository Record List
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