PXD007875

PXD007875 is an original dataset announced via ProteomeXchange.

Title	Proteomic analysis of the promotive effect of plant-derived smoke on plant growth of chickpe
Description	Plant-derived smoke plays a key role in seed germination and plant growth. To investigate the effect of plant-derived smoke on chickpea, a gel-free/label-free proteomic technique was used. Germination percentage, root/shoot length, and fresh biomass were increased in chickpea treated with 2000 ppm plant-derived smoke within 6 days. On treatment with 2000 ppm plant-derived smoke for 6 days, the abundance of 90 proteins including glycolysis-related proteins significantly changed in chickpea root. Proteins related to signaling and transport were increased; however, proteins related to protein metabolism, cell, and cell wall were decreased. The sucrose synthase for starch degradation was increased and total soluble sugar was induced in chickpea. Similarly, the proteins for nitrate pathway were increased and nitrate content was improved in chickpea. On the other hand, although secondary metabolism related proteins were decreased, flavonoid contents were increased in chickpea. Based on proteomic and immuno-blot analyses, proteins related to redox homeostasis were decreased and increased in root and shoot, relatively. Furthermore, fructose-bisphosphate aldolase was increased; while, phosphotransferase and phosphoglyceromutase were decreased in glycolysis. These results suggest that plant-derived smoke improves early stage of growth in chickpea with the balance of many cascades such as glycolysis, redox homeostasis, and secondary metabolism.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:41:03.787.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Takafumi Itoh
SpeciesList	scientific name: Cicer arietinum (Chickpea) (Garbanzo); NCBI TaxID: 3827;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2017-09-29 05:44:54	ID requested
1	2018-02-20 07:23:04	announced
⏵ 2	2024-10-22 04:41:11	announced	2024-10-22: Updated project metadata.

10.1016/j.jprot.2018.01.011;

Rehman A, Rehman SU, Khatoon A, Qasim M, Itoh T, Iwasaki Y, Wang X, Sunohara Y, Matsumoto H, Komatsu S, Proteomic analysis of the promotive effect of plant-derived smoke on plant growth of chickpea. J Proteomics, 176():56-70(2018) [pubmed]

curator keyword: Biological

submitter keyword: proteomics, plant-derived smoke, chickpea

Setsuko Komatsu
contact affiliation	University of Tsukuba
contact email	komatsu.setsuko.fu@u.tsukuba.ac.jp
lab head
Takafumi Itoh
contact affiliation	Fukui Prefectural University
contact email	ito-t@fpu.ac.jp
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/02/PXD007875

PRIDE project URI

• PRIDE
  1. PXD007875
     1. Label: PRIDE project
     2. Name: Proteomic analysis of the promotive effect of plant-derived smoke on plant growth of chickpe