PXD007681

PXD007681 is an original dataset announced via ProteomeXchange.

Title	Evaluation of the MPA Portable software performance on analyzing benchmark datasets
Description	Within the scope of a technical note we tested our MetaProteomeAnalyzer Portable software workflow on experimental data sets from samples with known composition. For generating a benchmarking data set, the bacterial strains (5BCT) Bacillus subtilis, Escherichia coli, Pseudomonas fluorescens, Micrococcus luteus and Desulfovibrio vulgaris were mixed with a protein ratio of 1:1:1:1:1.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:40:13.264.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD007681
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Fabian Kohrs
SpeciesList	scientific name: Micrococcus luteus (Micrococcus lysodeikticus); NCBI TaxID: 1270; scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Bacillus subtilis; NCBI TaxID: 1423; scientific name: Desulfovibrio vulgaris str. Hildenborough; NCBI TaxID: 882; scientific name: Pseudomonas fluorescens; NCBI TaxID: 294;
ModificationList	Carbamidomethyl
Instrument	LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2017-09-06 23:26:57	ID requested
1	2017-12-13 06:36:30	announced
2	2017-12-13 06:50:44	announced	Updated publication reference for PubMed record(s): 29215871.
⏵ 3	2024-10-22 04:40:17	announced	2024-10-22: Updated project metadata.

10.1021/acs.analchem.7b03544;

Muth T, Kohrs F, Heyer R, Benndorf D, Rapp E, Reichl U, Martens L, Renard BY, MPA Portable: A Stand-Alone Software Package for Analyzing Metaproteome Samples on the Go. Anal Chem, 90(1):685-689(2018) [pubmed]

10.6019/PXD007681;

curator keyword: Technical

submitter keyword: Bioinformatics,Metaproteomics, Protein identification, Data visualization

Dr. Dirk Benndorf
contact affiliation	Bioprocess Engineering, Otto von Guericke University Magdeburg, Magdeburg, Germany Max Planck Institute for Dynamics of Complex Technical Systems, Bioprocess Engineering, Magdeburg, Germany.
contact email	benndorf@mpi-magdeburg.mpg.de
lab head
Fabian Kohrs
contact affiliation	Otto von Guericke University Magdeburg, Germany
contact email	kohrs@mpi-magdeburg.mpg.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2012/12/PXD007681

PRIDE project URI

• PRIDE
  1. PXD007681
     1. Label: PRIDE project
     2. Name: Evaluation of the MPA Portable software performance on analyzing benchmark datasets