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PXD007662

PXD007662 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleProteogenomics of malignant melanoma cell lines: searching for genetically encoded point mutations in LC-MS/MS data
DescriptionIn this study we performed proteogenomic analysis for 9 cell lines of malignant melanoma. The main objectives of the study were identifying the variants originating from point mutations and analyzing the effect of exome data filtering on the outcome of variant identification.
HostingRepositoryPRIDE
AnnounceDate2018-12-05
AnnouncementXMLSubmission_2019-02-11_02:48:00.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterIrina Ilina
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue
InstrumentQ Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02017-09-05 07:28:58ID requested
12018-12-05 08:33:33announced
22019-02-11 02:48:01announcedUpdated publication reference for PubMed record(s): 29619825.
Publication List
Lobas AA, Pyatnitskiy MA, Chernobrovkin AL, Ilina IY, Karpov DS, Solovyeva EM, Kuznetsova KG, Ivanov MV, Lyssuk EY, Kliuchnikova AA, Voronko OE, Larin SS, Zubarev RA, Gorshkov MV, Moshkovskii SA, Proteogenomics of Malignant Melanoma Cell Lines: The Effect of Stringency of Exome Data Filtering on Variant Peptide Identification in Shotgun Proteomics. J Proteome Res, 17(5):1801-1811(2018) [pubmed]
Keyword List
curator keyword: Biomedical
submitter keyword: Melanoma, LS-MS/MS
Contact List
Sergei A. Moshkovskii
contact affiliationHead of Laboratory of Medical Proteomics Department of Personalized Medicine Institute of Biomedical Chemistry Russia
contact emailsmosh@mail.ru
lab head
Irina Ilina
contact affiliationIBMC
contact emailirinailina.ibmc@gmail.com
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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