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PXD007662

DataSet Summary

  • HostingRepository: PRIDE
  • AnnounceDate: 2018-12-05
  • AnnouncementXML: Submission_2019-02-11_02:48:00.xml
  • DigitalObjectIdentifier:
  • ReviewLevel: Peer-reviewed dataset
  • DatasetOrigin: Original data
  • RepositorySupport: Unsupported dataset by repository
  • PrimarySubmitter: Irina Ilina
  • Title: Proteogenomics of malignant melanoma cell lines: searching for genetically encoded point mutations in LC-MS/MS data
  • Description: In this study we performed proteogenomic analysis for 9 cell lines of malignant melanoma. The main objectives of the study were identifying the variants originating from point mutations and analyzing the effect of exome data filtering on the outcome of variant identification.
  • SpeciesList: scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
  • ModificationList: monohydroxylated residue; iodoacetamide derivatized residue
  • Instrument: Q Exactive

Dataset History

VersionDatetimeStatusChangeLog Entry
02017-09-05 07:28:58ID requested
12018-12-05 08:33:33announced
22019-02-11 02:48:01announcedUpdated publication reference for PubMed record(s): 29619825.

Publication List

  1. Lobas AA, Pyatnitskiy MA, Chernobrovkin AL, Ilina IY, Karpov DS, Solovyeva EM, Kuznetsova KG, Ivanov MV, Lyssuk EY, Kliuchnikova AA, Voronko OE, Larin SS, Zubarev RA, Gorshkov MV, Moshkovskii SA, Proteogenomics of Malignant Melanoma Cell Lines: The Effect of Stringency of Exome Data Filtering on Variant Peptide Identification in Shotgun Proteomics. J Proteome Res, 17(5):1801-1811(2018) [pubmed]

Keyword List

  1. curator keyword: Biomedical
  2. submitter keyword: Melanoma, LS-MS/MS

Contact List

    Sergei A. Moshkovskii
    • contact affiliation: Head of Laboratory of Medical Proteomics Department of Personalized Medicine Institute of Biomedical Chemistry Russia
    • contact email: smosh@mail.ru
    • lab head:
    Irina Ilina
    • contact affiliation: IBMC
    • contact email: irinailina.ibmc@gmail.com
    • dataset submitter:

Full Dataset Link List

  1. Dataset FTP location
  2. PRIDE project URI
Repository Record List
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