⮝ Full datasets listing

PXD007661

PXD007661 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleGlobal proteome profile of Elizabethkingia meningoseptica: an opportunistic nosocomial pathogen
DescriptionElizabethkingia meningoseptica previously known as Chryseobacteriummeningosepticum is a gram-negative bacillus, commonly encountered in hospital environment. The pathogen is highly prevalent in hospital acquired neonatal meningitis. We performed unbiased global proteomic profiling and Proteogenomics analysis of E meningoseptica using shotgun proteomic sequencing approach. In all, we report peptide level evidence for 2796 annotated proteins. In addition, proteogenomic analysis of GSSPs resulted in the identification of four novel genes and revised existing annotation of seven genes. This database will serve as a crucial tool for future studies such as drug and vaccine design.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_04:40:20.155.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterKeshava Prasad T. S.
SpeciesList scientific name: Elizabethkingia meningoseptica; NCBI TaxID: 238;
ModificationListformylated residue; monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
InstrumentLTQ Orbitrap
Dataset History
RevisionDatetimeStatusChangeLog Entry
02017-09-05 07:16:09ID requested
12020-02-17 18:04:17announced
22024-10-22 04:40:26announced2024-10-22: Updated project metadata.
Publication List
10.1089/omi.2019.0039;
Agrawal A, Ravikumar R, Varun CN, Kumar M, Chatterjee O, Advani J, Gopalakrishnan L, Nagaraj S, Mohanty V, Patil AH, Sreeramulu B, Malik A, Pinto SM, Prasad TSK, : An Opportunistic Nosocomial Pathogen. OMICS, 23(6):318-326(2019) [pubmed]
Keyword List
submitter keyword: Virulence,Elizabethkingia meningoseptica, Nosocomial pathogen, Proteogenomics
Contact List
T. S. Keshava Prasad
contact affiliationInstitute of Bioinformatics, 7th floor, Discover Building, International Tech Park, Bangalore, India.
contact emailkeshav@ibioinformatics.org
lab head
Keshava Prasad T. S.
contact affiliationInstitute of Bioinformatics, Bangalore, Karnataka, India.
contact emailkeshav@ibioinformatics.org
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD007661
PRIDE project URI
Repository Record List
[ + ]