PXD007661 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Global proteome profile of Elizabethkingia meningoseptica: an opportunistic nosocomial pathogen |
Description | Elizabethkingia meningoseptica previously known as Chryseobacteriummeningosepticum is a gram-negative bacillus, commonly encountered in hospital environment. The pathogen is highly prevalent in hospital acquired neonatal meningitis. We performed unbiased global proteomic profiling and Proteogenomics analysis of E meningoseptica using shotgun proteomic sequencing approach. In all, we report peptide level evidence for 2796 annotated proteins. In addition, proteogenomic analysis of GSSPs resulted in the identification of four novel genes and revised existing annotation of seven genes. This database will serve as a crucial tool for future studies such as drug and vaccine design. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:40:20.155.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Keshava Prasad T. S. |
SpeciesList | scientific name: Elizabethkingia meningoseptica; NCBI TaxID: 238; |
ModificationList | formylated residue; monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-09-05 07:16:09 | ID requested | |
1 | 2020-02-17 18:04:17 | announced | |
⏵ 2 | 2024-10-22 04:40:26 | announced | 2024-10-22: Updated project metadata. |
Publication List
10.1089/omi.2019.0039; |
Agrawal A, Ravikumar R, Varun CN, Kumar M, Chatterjee O, Advani J, Gopalakrishnan L, Nagaraj S, Mohanty V, Patil AH, Sreeramulu B, Malik A, Pinto SM, Prasad TSK, : An Opportunistic Nosocomial Pathogen. OMICS, 23(6):318-326(2019) [pubmed] |
Keyword List
submitter keyword: Virulence,Elizabethkingia meningoseptica, Nosocomial pathogen, Proteogenomics |
Contact List
T. S. Keshava Prasad |
contact affiliation | Institute of Bioinformatics, 7th floor, Discover Building, International Tech Park, Bangalore, India. |
contact email | keshav@ibioinformatics.org |
lab head | |
Keshava Prasad T. S. |
contact affiliation | Institute of Bioinformatics, Bangalore, Karnataka, India. |
contact email | keshav@ibioinformatics.org |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD007661 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD007661
- Label: PRIDE project
- Name: Global proteome profile of Elizabethkingia meningoseptica: an opportunistic nosocomial pathogen