PXD007661

PXD007661 is an original dataset announced via ProteomeXchange.

Title	Global proteome profile of Elizabethkingia meningoseptica: an opportunistic nosocomial pathogen
Description	Elizabethkingia meningoseptica previously known as Chryseobacteriummeningosepticum is a gram-negative bacillus, commonly encountered in hospital environment. The pathogen is highly prevalent in hospital acquired neonatal meningitis. We performed unbiased global proteomic profiling and Proteogenomics analysis of E meningoseptica using shotgun proteomic sequencing approach. In all, we report peptide level evidence for 2796 annotated proteins. In addition, proteogenomic analysis of GSSPs resulted in the identification of four novel genes and revised existing annotation of seven genes. This database will serve as a crucial tool for future studies such as drug and vaccine design.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:40:20.155.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Keshava Prasad T. S.
SpeciesList	scientific name: Elizabethkingia meningoseptica; NCBI TaxID: 238;
ModificationList	formylated residue; monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2017-09-05 07:16:09	ID requested
1	2020-02-17 18:04:17	announced
⏵ 2	2024-10-22 04:40:26	announced	2024-10-22: Updated project metadata.

10.1089/omi.2019.0039;

Agrawal A, Ravikumar R, Varun CN, Kumar M, Chatterjee O, Advani J, Gopalakrishnan L, Nagaraj S, Mohanty V, Patil AH, Sreeramulu B, Malik A, Pinto SM, Prasad TSK, : An Opportunistic Nosocomial Pathogen. OMICS, 23(6):318-326(2019) [pubmed]

submitter keyword: Virulence,Elizabethkingia meningoseptica, Nosocomial pathogen, Proteogenomics

T. S. Keshava Prasad
contact affiliation	Institute of Bioinformatics, 7th floor, Discover Building, International Tech Park, Bangalore, India.
contact email	keshav@ibioinformatics.org
lab head
Keshava Prasad T. S.
contact affiliation	Institute of Bioinformatics, Bangalore, Karnataka, India.
contact email	keshav@ibioinformatics.org
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD007661

PRIDE project URI

• PRIDE
  1. PXD007661
     1. Label: PRIDE project
     2. Name: Global proteome profile of Elizabethkingia meningoseptica: an opportunistic nosocomial pathogen