PXD007643

PXD007643 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	UPS-2 - Increased Sensitivity of Mass Spectrometry by Alkaline Two-Dimensional Liquid Chromatography: Deep Cover of the Human Proteome in Gene-Centric Mode
Description	using UPS-2 set as an example we characterized mass spectrometric approaches from the point of view of sensitivity (Sn), specificity (Sp) and accuracy (Ac)
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:40:11.232.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Ekaterina Ilgisonis
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	Oxidation; Carbamidomethyl; Gln->pyro-Glu
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2017-09-04 03:42:29	ID requested
1	2018-11-26 02:43:25	announced
⏵ 2	2024-10-22 04:40:19	announced	2024-10-22: Updated project metadata.

Publication List

10.1021/acs.jproteome.8b00754;
Ilgisonis EV, Kopylov AT, Ponomarenko EA, Poverennaya EV, Tikhonova OV, Farafonova TE, Novikova S, Lisitsa AV, Zgoda VG, Archakov AI, Increased Sensitivity of Mass Spectrometry by Alkaline Two-Dimensional Liquid Chromatography: Deep Cover of the Human Proteome in Gene-Centric Mode. J Proteome Res, 17(12):4258-4266(2018) [pubmed]

10.1021/acs.jproteome.8b00754;

Ilgisonis EV, Kopylov AT, Ponomarenko EA, Poverennaya EV, Tikhonova OV, Farafonova TE, Novikova S, Lisitsa AV, Zgoda VG, Archakov AI, Increased Sensitivity of Mass Spectrometry by Alkaline Two-Dimensional Liquid Chromatography: Deep Cover of the Human Proteome in Gene-Centric Mode. J Proteome Res, 17(12):4258-4266(2018) [pubmed]

Keyword List

curator keyword: Technical
submitter keyword: Human Proteome Project, specificity, sensitivity, accuracy, shotgun,elected reaction monitoring, proteome

curator keyword: Technical

submitter keyword: Human Proteome Project, specificity, sensitivity, accuracy, shotgun,elected reaction monitoring, proteome

Contact List

Victor Zgoda
contact affiliation	IBMC
contact email	victor.zgoda@gmail.com
lab head
Ekaterina Ilgisonis
contact affiliation	IBMC
contact email	ilgisonis.ev@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/11/PXD007643
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/11/PXD007643

PRIDE project URI

Repository Record List

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