PXD007623

PXD007623 is an original dataset announced via ProteomeXchange.

Title	Effect of nitroprusside on the proteomic expression of Desulfovibrio vulgaris Hildenborough
Description	In this study, the effect of nitroprusside on protein expression of the model sulfate reducing bacterial isolate (Desulfovibrio vulgaris Hildenborough) was investigated. Three different experiments were done with different exposure time to nitroprusside (30 min, 1 hour, and 3 hours). In each experiment, the culture was grown in quadruplet of serum bottles containing 40 ml complex medium (Postgate medium B) under anaerobic condition at 30oC. At mid-log growth phase, each of the quadruplet culture was divided into two (20 ml each) and nitroprusside (0.25 mM) was added to one of each bottle while the other bottles were used as controls. After 30 min, 1 hour, and 3 hours of exposure to nitroprusside, the culture (1 ml) was pelleted and used for proteomic analysis.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:40:20.069.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Maryam Ataeian
SpeciesList	scientific name: Desulfovibrio vulgaris str. Hildenborough; NCBI TaxID: 882;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive Plus

Revision	Datetime	Status	ChangeLog Entry
0	2017-09-01 03:40:33	ID requested
1	2018-05-17 09:01:08	announced
2	2018-06-10 11:14:51	announced	Updated publication reference for PubMed record(s): 29867883.
⏵ 3	2024-10-22 04:40:20	announced	2024-10-22: Updated project metadata.

10.3389/fmicb.2018.00981;

Fida TT, Voordouw J, Ataeian M, Kleiner M, Okpala G, Mand J, Voordouw G, Synergy of Sodium Nitroprusside and Nitrate in Inhibiting the Activity of Sulfate Reducing Bacteria in Oil-Containing Bioreactors. Front Microbiol, 9():981(2018) [pubmed]

curator keyword: Biological

submitter keyword: growth inhibition, sulfide, sulfate reduction,nitroprusside, proteomic, souring

Gerrit Voordouw
contact affiliation	University of Calgary, Microbiology
contact email	voordouw@ucalgary.ca
lab head
Maryam Ataeian
contact affiliation	PhD student
contact email	maryam.ataeian@ucalgary.ca
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/05/PXD007623

PRIDE project URI

• PRIDE
  1. PXD007623
     1. Label: PRIDE project
     2. Name: Effect of nitroprusside on the proteomic expression of Desulfovibrio vulgaris Hildenborough