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PXD007587

PXD007587 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleSipros Ensemble Improves Database Searching and Filtering for Complex Metaproteomics
DescriptionComplex microbial communities can be characterized by metagenomics and metaproteomics. However, metagenome assemblies often generate enormous, and yet incomplete, protein databases, which undermines the identification of peptides and proteins in metaproteomics. This challenge calls for increased discrimination of target identifications from decoy identifications by database searching and filtering algorithms in metaproteomics. Sipros Ensemble was developed here for metaproteomics using an ensemble approach to addressing this challenge.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_04:01:19.824.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterZhou Li
SpeciesList scientific name: Escherichia coli; NCBI TaxID: 562;
ModificationListmonohydroxylated residue
InstrumentLTQ Orbitrap Elite
Dataset History
RevisionDatetimeStatusChangeLog Entry
02017-08-29 05:51:34ID requested
12018-02-09 04:04:29announced
22024-10-22 04:01:20announced2024-10-22: Updated project metadata.
Publication List
10.1093/bioinformatics/btx601;
Guo X, Li Z, Yao Q, Mueller RS, Eng JK, Tabb DL, Hervey WJ, Pan C, Sipros Ensemble improves database searching and filtering for complex metaproteomics. Bioinformatics, 34(5):795-802(2018) [pubmed]
Keyword List
curator keyword: Metaproteomics, Technical
submitter keyword: machine learning,metaproteomics, database searching
Contact List
Chongle Pan
contact affiliationOak Ridge National Laboratory
contact emailpanc@ornl.gov
lab head
Zhou Li
contact affiliationOak Ridge National Lab
contact emailliz1@ornl.gov
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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