PXD007580

PXD007580 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Identification of human blood plasma proteins in shotgun proteomics
Description	The study focuses on identification of human blood plasma proteins based on the analysis of MS1 and MS2 data with the use of crude unlabelled synthetic (CUS) peptides for guaranteed recording of their MS2 spectra and subsequent verification of the protein identifications by the SRM method. The search performed and subsequent verification of the protein identifications by the selected reaction monitoring method of had identified 17 proteins in human blood plasma, which corresponded to 17 out of the 19 CUS peptides used.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_06:57:26.869.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD007580
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Yuliana Miroshnichenko
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	Oxidation; Carbamidomethyl
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2017-08-28 23:25:28	ID requested
1	2019-06-26 00:23:51	announced
⏵ 2	2023-11-14 06:57:27	announced	2023-11-14: Updated project metadata.

Publication List

10.6019/PXD007580;

10.6019/PXD007580;

Keyword List

submitter keyword: shotgun proteomics, mass spectrometry,bottom-up proteomics, spike-in peptides, human plasma, protein identification, LC-MS/MS

submitter keyword: shotgun proteomics, mass spectrometry,bottom-up proteomics, spike-in peptides, human plasma, protein identification, LC-MS/MS

Contact List

Vladlen Stanislavovich Skvortsov
contact affiliation	Department of Bioinformatics, Laboratory of Parallel Computing and Informational Technology, Orekhovich Institute of Biomedical Chemistry, Moscow, Russia
contact email	vladlen@ibmh.msk.su
lab head
Yuliana Miroshnichenko
contact affiliation	Orekhovich Institute of Biomedical Chemistry, Moscow, Russia
contact email	yuliana.miroshnichenko@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD007580
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD007580

PRIDE project URI

Repository Record List

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