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DataSet Summary

  • HostingRepository: MassIVE
  • AnnounceDate: 2018-10-10
  • AnnouncementXML: Submission_2018-10-10_07:08:22.xml
  • DigitalObjectIdentifier:
  • ReviewLevel: Peer-reviewed dataset
  • DatasetOrigin: Original data
  • RepositorySupport: Supported dataset by repository
  • PrimarySubmitter: Gingras Lab
  • Title: MARF1_APMS_Nishimura_V2
  • Description: This set of submissions contains the mass spectrometry files for the manuscript by Tamiko Nishimura et al. that describes characterization of MARF1, titled "MARF1 is an endoribonuclease that interacts with the DCP1:2 decapping complex and degrades target mRNAs". Affinity purification of MARF1 is performed in biological duplicates using lysates of Flp-In T-REx HEK293 cells stably expressing FLAG tagged MARF1 and compared to 6 negative controls using SAINTexpress. MS files were acquired on AB SCIEX Triple TOF 6600 instrument. See README file and associated tables for additional details.
  • SpeciesList: scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606;
  • ModificationList: deamidated L-asparagine; deamidated L-glutamine; L-methionine sulfoxide
  • Instrument: TripleTOF 6600

Dataset History

VersionDatetimeStatusChangeLog Entry
02017-08-27 05:41:12ID requested
12018-10-10 07:08:22announced

Publication List

  1. Tamiko Nishimura, Hana Fakima, Tobias Brandmann, Ji-Young Youn, Anne-Claude Gingras, Martin Jinek and Marc R. Fabian. MARF1 is an endoribonuclease that interacts with the DCP1:2 decapping complex and degrades target mRNAs. Nucleic Acid Research (in press).

Keyword List

  1. submitter keyword: MARF1, affinity purification

Contact List

    Anne-Claude Gingras
    • contact affiliation: LTRI
    • contact email: gingras@lunenfeld.ca
    • lab head:
    Gingras Lab
    • contact affiliation: Samuel Lunenfeld Research Institute
    • contact email: gingras@mshri.on.ca
    • dataset submitter:

Full Dataset Link List

  1. MassIVE dataset URI
  2. Dataset FTP location
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