PXD007554

PXD007554 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	MARF1_APMS_Nishimura_V2
Description	This set of submissions contains the mass spectrometry files for the manuscript by Tamiko Nishimura et al. that describes characterization of MARF1, titled "MARF1 is an endoribonuclease that interacts with the DCP1:2 decapping complex and degrades target mRNAs". Affinity purification of MARF1 is performed in biological duplicates using lysates of Flp-In T-REx HEK293 cells stably expressing FLAG tagged MARF1 and compared to 6 negative controls using SAINTexpress. MS files were acquired on AB SCIEX Triple TOF 6600 instrument. See README file and associated tables for additional details.
HostingRepository	MassIVE
AnnounceDate	2018-10-10
AnnouncementXML	Submission_2018-10-10_07:08:22.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Gingras Lab
SpeciesList	scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606;
ModificationList	deamidated L-asparagine; deamidated L-glutamine; L-methionine sulfoxide
Instrument	TripleTOF 6600

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2017-08-27 05:41:12	ID requested
⏵ 1	2018-10-10 07:08:22	announced

Publication List

Tamiko Nishimura, Hana Fakima, Tobias Brandmann, Ji-Young Youn, Anne-Claude Gingras, Martin Jinek and Marc R. Fabian. MARF1 is an endoribonuclease that interacts with the DCP1:2 decapping complex and degrades target mRNAs. Nucleic Acid Research (in press).

Tamiko Nishimura, Hana Fakima, Tobias Brandmann, Ji-Young Youn, Anne-Claude Gingras, Martin Jinek and Marc R. Fabian. MARF1 is an endoribonuclease that interacts with the DCP1:2 decapping complex and degrades target mRNAs. Nucleic Acid Research (in press).

Keyword List

submitter keyword: MARF1, affinity purification

submitter keyword: MARF1, affinity purification

Contact List

Anne-Claude Gingras
contact affiliation	LTRI
contact email	gingras@lunenfeld.ca
lab head
Gingras Lab
contact affiliation	Samuel Lunenfeld Research Institute
contact email	gingras@mshri.on.ca
dataset submitter

Full Dataset Link List

MassIVE dataset URI
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MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000081483