PXD007133

PXD007133 is an original dataset announced via ProteomeXchange.

Title	Succinylome analysis of pCAR1-free and pCAR1-harbouring Pseudomonas putida KT2440.
Description	The impact of the conjugative plasmid pCAR1, which is involved in carbazole degradation, on the succinylome of host Pseudomonas putida KT2440 was investigated using a stable isotope labeling by amino acids in cell culture (SILAC)-based quantitative analysis. This dataset is related to PXD007089.
HostingRepository	PRIDE
AnnounceDate	2018-11-21
AnnouncementXML	Submission_2018-11-21_06:17:39.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Saori Kosono
SpeciesList	scientific name: Pseudomonas putida KT2440; NCBI TaxID: 160488;
ModificationList	methionine oxidation with neutral loss of 80 Da; S-carboxamidomethyl-L-cysteine; methionine oxidation with neutral loss of 64 Da; alpha-amino succinylated residue; N6-succinyl-L-lysine; 6x(13)C labeled residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2017-07-26 02:08:04	ID requested
⏵ 1	2018-11-21 06:17:40	announced

Vasileva D, Suzuki-Minakuchi C, Kosono S, Yoshida M, Okada K, Nojiri H, Proteome and acylome analyses of the functional interaction network between the carbazole-degradative plasmid pCAR1 and host Pseudomonas putida KT2440. Environ Microbiol Rep, 10(3):299-309(2018) [pubmed]

submitter keyword: Pseudomonas putida KT2440, pCAR1, SILAC, LC-MSMS

Saori Kosono
contact affiliation	Biotechnology Research Center, The University of Tokyo
contact email	uskos@mail.ecc.u-tokyo.ac.jp
lab head
Saori Kosono
contact affiliation	UTokyo
contact email	uskos@mail.ecc.u-tokyo.ac.jp
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/11/PXD007133

PRIDE project URI

• PRIDE
  1. PXD007133
     1. Label: PRIDE project
     2. Name: Succinylome analysis of pCAR1-free and pCAR1-harbouring Pseudomonas putida KT2440.