PXD007077

PXD007077 is an original dataset announced via ProteomeXchange.

Title	Soil metaproteomics using DNA RNA protein co-extraction method
Description	Soil is an inherently complex matrix and as such, we believe when performing culture-independent microbial community analyses using the 'omics' suite of tools, all biomolecules investigated should be co-extracted from the same biological sample. To this end, we developed a robust, cost-effective DNA, RNA and protein co-extraction method for soil. The samples deposited here represent 3 biological replicates from one of eight soil types tested in this work.
HostingRepository	PRIDE
AnnounceDate	2019-07-15
AnnouncementXML	Submission_2019-07-15_08:54:08.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Camilla Thorn
SpeciesList	scientific name: environmental samples; NCBI TaxID: 318178;
ModificationList	No PTMs are included in the dataset
Instrument	QSTAR

Revision	Datetime	Status	ChangeLog Entry
0	2017-07-19 01:45:17	ID requested
⏵ 1	2019-07-15 08:54:09	announced

Thorn CE, Bergesch C, Joyce A, Sambrano G, McDonnell K, Brennan F, Heyer R, Benndorf D, Abram F, A robust, cost-effective method for DNA, RNA and protein co-extraction from soil, other complex microbiomes and pure cultures. Mol Ecol Resour, 19(2):439-455(2019) [pubmed]

submitter keyword: soil metaproteomics LC MS/MS

Florence Abram
contact affiliation	Functional Environmental Microbiology, College of Science, NUI Galway, Ireland
contact email	florence.abram@nuigalway.ie
lab head
Camilla Thorn
contact affiliation	National University of Ireland Galway
contact email	camilla.james1@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD007077

PRIDE project URI

• PRIDE
  1. PXD007077
     1. Label: PRIDE project
     2. Name: Soil metaproteomics using DNA RNA protein co-extraction method