PXD007039

PXD007039 is an original dataset announced via ProteomeXchange.

Title	Picky - a simple online method designer for targeted proteomics
Description	Picky is an online method designer for targeted proteomics. To assess the performance of PRM methods designed by Picky we carried out a benchmark experiment. As reference samples we used different amounts of human proteins spiked into 1.4 µg yeast lysate. These sample where analyzed in PRM and DDA mode. All methods inlcuded a shotgun method (top10 for DDA and top3 for PRM) and can therefore all be analyzed by MaxQuant.
HostingRepository	PRIDE
AnnounceDate	2017-08-04
AnnouncementXML	Submission_2018-03-02_00:16:12.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Henrik Zauber
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2017-07-13 13:19:23	ID requested
1	2017-08-04 03:15:18	announced
⏵ 2	2018-03-02 00:16:14	announced	Updated publication reference for PubMed record(s): 29489744.

Zauber H, Kirchner M, Selbach M, Picky: a simple online PRM and SRM method designer for targeted proteomics. Nat Methods, 15(3):156-157(2018) [pubmed]

curator keyword: Technical

submitter keyword: Benchmark, DDA, PRM

Matthias Selbach
contact affiliation	Max-Delbrück-Centrum für Molekulare Medizin in der Helmholtz-Gemeinschaft Robert-Rössle-Straße 10 13125 Berlin
contact email	matthias.selbach@mdc-berlin.de
lab head
Henrik Zauber
contact affiliation	MDC Berlin-Buch
contact email	henrik.zauber@mdc-berlin.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/08/PXD007039

PRIDE project URI

• PRIDE
  1. PXD007039
     1. Label: PRIDE project
     2. Name: Picky - a simple online method designer for targeted proteomics