PXD006895

PXD006895 is an original dataset announced via ProteomeXchange.

Title	SubCellBarcode: Scalable proteome-wide mapping of protein localization and relocalization
Description	We have devised a simple and robust LC-MS/MS compatible protocol for subcellular protein localization studies. Here, we combine it with in depth proteome profiling and utilize the resulting dataset to predict the subcellular localization of more than 12000 proteins in 5 human cancer cell lines. The data allows for exploration of both cell line specific and perturbation related protein localization changes as well as domain and splice variant effects and protein complex formation. The data is made accessible through the online resource www.subcellbarcode.org.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:39:28.228.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Mattias Vesterlund
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2017-07-07 03:44:38	ID requested
1	2019-01-03 12:54:51	announced
2	2019-01-07 02:14:44	announced	Updated publication reference for PubMed record(s): 30609389.
⏵ 3	2024-10-22 04:39:36	announced	2024-10-22: Updated project metadata.

10.1016/j.molcel.2018.11.035;

Orre LM, Vesterlund M, Pan Y, Arslan T, Zhu Y, Fernandez Woodbridge A, Frings O, Fredlund E, Lehti, ö J, SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization. Mol Cell, 73(1):166-182.e7(2019) [pubmed]

curator keyword: Biological

submitter keyword: A431, MCF7, U251, Human, Cancer, HCC827, Subcellular protein localization, HiRIEF,Subcellular, NCI-H322, LC-MS.

Janne Lehtiö
contact affiliation	Dept. Oncology Pathology, Karolinska Institutet, and Scilifelab, Stockholm, Sweden
contact email	janne.lehtio@ki.se
lab head
Mattias Vesterlund
contact affiliation	Karolinska Institutet
contact email	mattias.vesterlund@ki.se
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD006895

PRIDE project URI

• PRIDE
  1. PXD006895
     1. Label: PRIDE project
     2. Name: SubCellBarcode: Scalable proteome-wide mapping of protein localization and relocalization